[firedrake] problem with scripts/firedrake-clean

[Eike Mueller]

Dear firedrakers,

I get a strange error message when I run ./scripts/firedrake-clean (branch multigrid-parallel, just pulled from remote):

eikemueller at 138-38-169-12 $ ./scripts/firedrake-clean 
Traceback (most recent call last):
  File "./scripts/firedrake-clean", line 3, in <module>
    from firedrake.ffc_interface import clear_cache, FFCKernel
  File "/Users/eikemueller/PostDocBath/EllipticSolvers/firedrake/firedrake/__init__.py", line 2, in <module>
    import petsc
  File "/Users/eikemueller/PostDocBath/EllipticSolvers/firedrake/firedrake/petsc.py", line 4, in <module>
    petsc4py.init(sys.argv)
  File "/Users/eikemueller/PostDocBath/EllipticSolvers/petsc4py/arch-darwin-c-opt/lib/python2.7/site-packages/petsc4py/__init__.py", line 42, in init
    PETSc = petsc4py.lib.ImportPETSc(arch)
  File "/Users/eikemueller/PostDocBath/EllipticSolvers/petsc4py/arch-darwin-c-opt/lib/python2.7/site-packages/petsc4py/lib/__init__.py", line 29, in ImportPETSc
    return Import('petsc4py', 'PETSc', path, arch)
  File "/Users/eikemueller/PostDocBath/EllipticSolvers/petsc4py/arch-darwin-c-opt/lib/python2.7/site-packages/petsc4py/lib/__init__.py", line 64, in Import
    module = imp.load_module(fullname, fo, fn, stuff)
  File "PETSc.pyx", line 100, in init petsc4py.PETSc (src/petsc4py.PETSc.c:221273)
RuntimeError: module compiled against API version 9 but this version of numpy is 7

This is odd, because I just recompiled petsc4py (git pull; make clean; python setup.py install --prefix=`pwd`/$PETSC_ARCH). I did, however, get the following during petsc4py building:

In file included from /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1760:0,
                 from /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:17,
                 from /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4,
                 from src/include/petsc4py/numpy.h:11,
                 from src/petsc4py.PETSc.c:347,
                 from src/PETSc.c:3:
/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
 #warning "Using deprecated NumPy API, disable it by " \

Also, I can build and use firedrake without any problems.

Thanks,

Eike

--

Dr Eike Hermann Mueller
Research Associate (PostDoc)

Department of Mathematical Sciences
University of Bath
Bath BA2 7AY, United Kingdom

+44 1225 38 5803
e.mueller at bath.ac.uk
http://people.bath.ac.uk/em459/

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