[firedrake] Firedrake Installation

[Andrew McRae]

Hi all,

Suet [cc'd], one of Colin's project students, is encoutering the following
error when using the PyOP2 'quick install' script.

Can anyone help?  IIRC, this is running in a (32-bit?) Ubuntu 14.04 virtual
machine.

(Last night, she was getting an mpi4py error, but I believe this
<https://github.com/OP2/PyOP2/commit/e15b3ee8d72369f10c9a84d944a3ecbf06f7e927>
fixed that).

Cheers,

Andrew

On 16 November 2014 13:28, Lee, Suet <suet.lee11 at imperial.ac.uk> wrote:

>  I ran the install mpi4py commange but I have a new error now:
>
>
>  mosh at ubuntu:~$ wget -O -
> https://github.com/OP2/PyOP2/raw/master/install.sh | sudo bash
> --2014-11-16 13:20:14--
> https://github.com/OP2/PyOP2/raw/master/install.sh
> Resolving github.com (github.com)... 192.30.252.131
> Connecting to github.com (github.com)|192.30.252.131|:443... connected.
> HTTP request sent, awaiting response... 302 Found
> Location: https://raw.githubusercontent.com/OP2/PyOP2/master/install.sh
> [following]
> --2014-11-16 13:20:16--
> https://raw.githubusercontent.com/OP2/PyOP2/master/install.sh
> Resolving raw.githubusercontent.com (raw.githubusercontent.com)...
> 185.31.18.133
> Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.31.18.133|:443...
> connected.
> HTTP request sent, awaiting response... 200 OK
> Length: 3667 (3.6K) [text/plain]
> Saving to: ‘STDOUT’
>
> 100%[======================================>] 3,667       --.-K/s   in
> 0s
>
> 2014-11-16 13:20:16 (40.6 MB/s) - written to stdout [3667/3667]
>
> PyOP2 installation started at Sun Nov 16 13:20:16 GMT 2014
>   on Linux ubuntu 3.13.0-24-generic #46-Ubuntu SMP Thu Apr 10 19:08:14 UTC
> 2014 i686 i686 i686 GNU/Linux
>
> *** Privileged installation ***
>   Running unprivileged commands as mosh
>
> *** Preparing system ***
>
> *** Installing dependencies ***
>
> *** Installing PETSc ***
>
> *** Installing PyOP2 ***
>
> [ubuntu:31603] *** Process received signal ***
> [ubuntu:31603] Signal: Floating point exception (8)
> [ubuntu:31603] Signal code: Integer divide-by-zero (1)
> [ubuntu:31603] Failing at address: 0xb74d6da0
> [ubuntu:31603] [ 0] [0xb779a40c]
> [ubuntu:31603] [ 1] /usr/lib/i386-linux-gnu/libhwloc.so.5(+0x2cda0)
> [0xb74d6da0]
> [ubuntu:31603] [ 2] /usr/lib/i386-linux-gnu/libhwloc.so.5(+0x2e71c)
> [0xb74d871c]
> [ubuntu:31603] [ 3] /usr/lib/i386-linux-gnu/libhwloc.so.5(+0x2ea8b)
> [0xb74d8a8b]
> [ubuntu:31603] [ 4] /usr/lib/i386-linux-gnu/libhwloc.so.5(+0x98f6)
> [0xb74b38f6]
> [ubuntu:31603] [ 5]
> /usr/lib/i386-linux-gnu/libhwloc.so.5(hwloc_topology_load+0x1c6)
> [0xb74b48ec]
> [ubuntu:31603] [ 6] /usr/lib/libopen-rte.so.4(orte_odls_base_open+0x7b1)
> [0xb76fa881]
> [ubuntu:31603] [ 7] /usr/lib/openmpi/lib/openmpi/mca_ess_hnp.so(+0x2445)
> [0xb7488445]
> [ubuntu:31603] [ 8] /usr/lib/libopen-rte.so.4(orte_init+0x1cf) [0xb76cfb3f]
> [ubuntu:31603] [ 9] /usr/lib/libopen-rte.so.4(orte_daemon+0x256)
> [0xb76ec1c6]
> [ubuntu:31603] [10] orted() [0x80485b3]
> [ubuntu:31603] [11] /lib/i386-linux-gnu/libc.so.6(__libc_start_main+0xf3)
> [0xb7504a83]
> [ubuntu:31603] [12] orted() [0x80485f8]
> [ubuntu:31603] *** End of error message ***
> [ubuntu:31601] [[INVALID],INVALID] ORTE_ERROR_LOG: Unable to start a
> daemon on the local node in file ess_singleton_module.c at line 343
> [ubuntu:31601] [[INVALID],INVALID] ORTE_ERROR_LOG: Unable to start a
> daemon on the local node in file ess_singleton_module.c at line 140
> [ubuntu:31601] [[INVALID],INVALID] ORTE_ERROR_LOG: Unable to start a
> daemon on the local node in file runtime/orte_init.c at line 128
> --------------------------------------------------------------------------
> It looks like orte_init failed for some reason; your parallel process is
> likely to abort.  There are many reasons that a parallel process can
> fail during orte_init; some of which are due to configuration or
> environment problems.  This failure appears to be an internal failure;
> here's some additional information (which may only be relevant to an
> Open MPI developer):
>
>   orte_ess_set_name failed
>   --> Returned value Unable to start a daemon on the local node (-128)
> instead of ORTE_SUCCESS
> --------------------------------------------------------------------------
> --------------------------------------------------------------------------
> It looks like MPI_INIT failed for some reason; your parallel process is
> likely to abort.  There are many reasons that a parallel process can
> fail during MPI_INIT; some of which are due to configuration or environment
> problems.  This failure appears to be an internal failure; here's some
> additional information (which may only be relevant to an Open MPI
> developer):
>
>   ompi_mpi_init: orte_init failed
>   --> Returned "Unable to start a daemon on the local node" (-128) instead
> of "Success" (0)
> --------------------------------------------------------------------------
> [ubuntu:31601] *** An error occurred in MPI_Init_thread
> [ubuntu:31601] *** on a NULL communicator
> [ubuntu:31601] *** Unknown error
> [ubuntu:31601] *** MPI_ERRORS_ARE_FATAL: your MPI job will now abort
> --------------------------------------------------------------------------
> An MPI process is aborting at a time when it cannot guarantee that all
> of its peer processes in the job will be killed properly.  You should
> double check that everything has shut down cleanly.
>
>   Reason:     Before MPI_INIT completed
>   Local host: ubuntu
>   PID:        31601
> --------------------------------------------------------------------------
> PyOP2 installation failed
>   See /home/mosh/PyOP2/pyop2_install.log for details
>
>
>  Any idea what's going on?
>
>
>  Suet
>
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