[firedrake] Firedrake Installation on Mac OS

[Anna Kalogirou]

Thanks.

I have now reached the point where I need test the PyOP2 installation, but when I write

make test

I get an error which I believe is related to open-mpi. It looks like libpetsc references the path

/private/tmp/pip-hBwvhb-build/macosx-10.9-x86_64-python/lib/libhwloc.5.dylib

which seems strange to me. The error log is:

cd test; py.test unit --backend=sequential
Traceback (most recent call last):
  File "/usr/local/lib/python2.7/site-packages/_pytest/config.py", line 543, in importconftest
    mod = conftestpath.pyimport()
  File "/usr/local/lib/python2.7/site-packages/py/_path/local.py", line 641, in pyimport
    __import__(modname)
  File "/Users/matak/PyOP2/test/conftest.py", line 40, in <module>
    from pyop2 import op2
  File "/usr/local/Cellar/python/2.7.8_2/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/PyOP2-0.11.0_124_ge15b3ee-py2.7-macosx-10.9-x86_64.egg/pyop2/__init__.py", line 9, in <module>
    from op2 import *
  File "/usr/local/Cellar/python/2.7.8_2/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/PyOP2-0.11.0_124_ge15b3ee-py2.7-macosx-10.9-x86_64.egg/pyop2/op2.py", line 39, in <module>
    import base
  File "/usr/local/Cellar/python/2.7.8_2/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/PyOP2-0.11.0_124_ge15b3ee-py2.7-macosx-10.9-x86_64.egg/pyop2/base.py", line 54, in <module>
    from sparsity import build_sparsity
ImportError: dlopen(/usr/local/Cellar/python/2.7.8_2/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/PyOP2-0.11.0_124_ge15b3ee-py2.7-macosx-10.9-x86_64.egg/pyop2/sparsity.so, 2): Library not loaded: /private/tmp/pip-hBwvhb-build/macosx-10.9-x86_64-python/lib/libhwloc.5.dylib
  Referenced from: /usr/local/lib/python2.7/site-packages/petsc/lib/libpetsc.3.05.2.dylib
  Reason: image not found
ERROR: could not load /Users/matak/PyOP2/test/conftest.py

make: *** [unit_sequential] Error 4



Thank you.

Best, Anna.



On 16 Nov 2014, at 15:20, Lawrence Mitchell <lawrence.mitchell at imperial.ac.uk<mailto:lawrence.mitchell at imperial.ac.uk>> wrote:


On 16 Nov 2014, at 14:16, Anna Kalogirou <A.Kalogirou at leeds.ac.uk<mailto:A.Kalogirou at leeds.ac.uk>> wrote:

Dear all,

I am trying to install Firedrake on a Mac OS X (version 10.9.5). I am following the installation instructions but I get an error during the PETSc installation step. I would really appreciate it if someone can help. Thank you very much!

Best,

Anna.


*******************************************************************************

                  UNABLE to EXECUTE BINARIES for ./configure

-------------------------------------------------------------------------------

Cannot run executables created with FC. If this machine uses a batch system

to submit jobs you will need to configure using ./configure with the additional option  --with-batch.

Otherwise there is problem with the compilers. Can you compile and run code with your compiler '/usr/local/bin/mpif90'?

*******************************************************************************

Does /usr/local/bin/mpif90 exist and is it able to compile a simple fortran file?  Furthermore, is the resulting binary runnable? That appears to be the problem petsc is complaining about it.

Lawrence
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