[firedrake] Firedrake Installation on Mac OS

[Anna Kalogirou]

Thank you Lawrence.

I re-installed PETSc with the new configure option and the PyOP2 tests now run. With backend=opencl the tests were successful, but about 600 fail with backend=openmp. They all seem to have the same error, see below.

Thank you for all the help.

Best, Anna.

=========================================================

/var/folders/cs/cbmmbcd13mv9jq1cptvdljzsl5jfkj/T/pyop2-cache-uid1717090897/22cdb1aae83a18075e91d543ddeb9fc3.c:43:15: warning: implicit declaration of function 'omp_get_thread_num' $
    int tid = omp_get_thread_num();
              ^
/var/folders/cs/cbmmbcd13mv9jq1cptvdljzsl5jfkj/T/pyop2-cache-uid1717090897/22cdb1aae83a18075e91d543ddeb9fc3.c:43:9: warning: unused variable 'tid' [-Wunused-variable]
    int tid = omp_get_thread_num();
        ^
2 warnings generated.
Undefined symbols for architecture x86_64:
  "_omp_get_thread_num", referenced from:
      _wrap_copy in 22cdb1aae83a18075e91d543ddeb9fc3-48732d.o
ld: symbol(s) not found for architecture x86_64
clang: error: linker command failed with exit code 1 (use -v to see invocation)

=========================================================



On 17 Nov 2014, at 08:32, Lawrence Mitchell <lawrence.mitchell at imperial.ac.uk<mailto:lawrence.mitchell at imperial.ac.uk>> wrote:



Hi Anna,

On 16 Nov 2014, at 18:24, Anna Kalogirou <A.Kalogirou at leeds.ac.uk<mailto:A.Kalogirou at leeds.ac.uk>> wrote:


I have now reached the point where I need test the PyOP2 installation, but when I write

make test

I get an error which I believe is related to open-mpi. It looks like libpetsc references the path

/private/tmp/pip-hBwvhb-build/macosx-10.9-x86_64-

Ok, this appears to be an issue with the way some external packages are installed by petsc when using pip. Hwloc is non essential so can you add --download-hwloc=0 to the petsc configure options. In the mean time I will report a bug upstream.

Cheers,

Lawrence
_______________________________________________
firedrake mailing list
firedrake at imperial.ac.uk<mailto:firedrake at imperial.ac.uk>
https://mailman.ic.ac.uk/mailman/listinfo/firedrake