[firedrake] firedrake broken on ARCHER after update

[Andrew McRae]

On 24 April 2015 at 18:26, Eike Mueller <E.Mueller at bath.ac.uk> wrote:

>  Dear all,
>
>  I’m trying to update my firedrake on ARCHER. I updated all relevant
> packages (fiat, petsc, coffee, ufl, ffc, PyOP2 and firedrake) but when I
> try to run firedrake-clean I get the error below.
>

--I can't help but wonder whether you forgot to update petsc4py, or whether
you only forget to enumerate it in that list!

Any idea what this could be?
>
>  Thanks,
>
>  Eike
>
>  /opt/modules/default/init/bash: line 11: unalias: pip: not found
> Traceback (most recent call last):
>   File "/var/opt/cray/alps/spool/13759147/firedrake-clean", line 3, in
> <module>
>     from firedrake.ffc_interface import clear_cache, FFCKernel
>   File "/fs2/n02/n02/eike/git_workspace/firedrake/firedrake/__init__.py",
> line 2, in <module>
>     import petsc
>   File "/fs2/n02/n02/eike/git_workspace/firedrake/firedrake/petsc.py",
> line 4, in <module>
>     petsc4py.init(sys.argv)
>   File
> "/work/n02/n02/eike/git_workspace/petsc4py/cray-gnu-shared/lib/python2.7/site-packages/petsc4py/__init__.py",
> line 42, in init
>     PETSc = petsc4py.lib.ImportPETSc(arch)
>   File
> "/work/n02/n02/eike/git_workspace/petsc4py/cray-gnu-shared/lib/python2.7/site-packages/petsc4py/lib/__init__.py",
> line 29, in ImportPETSc
>     return Import('petsc4py', 'PETSc', path, arch)
>   File
> "/work/n02/n02/eike/git_workspace/petsc4py/cray-gnu-shared/lib/python2.7/site-packages/petsc4py/lib/__init__.py",
> line 64, in Import
>     module = imp.load_module(fullname, fo, fn, stuff)
> ImportError:
> /work/n02/n02/eike/git_workspace/petsc/cray-gnu-shared/lib/libpetsc.so.3.05:
> undefined symbol: PetscDLLibraryRegister_petscts
>   --
>
>  Dr Eike Hermann Mueller
> Lecturer in Scientific Computing
>
> Department of Mathematical Sciences
> University of Bath
> Bath BA2 7AY, United Kingdom
>
> +44 1225 38 5557
> e.mueller at bath.ac.uk
> http://people.bath.ac.uk/em459/
>
>
>
>
>
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