[firedrake] Errors

[Justin Chang]

Sorry wrong log file.

I also had to clip the other stuff because the file was too big. Do you
need to see more?

Thanks,
Justin

On Fri, Nov 20, 2015 at 12:37 PM, Justin Chang <jychang48 at gmail.com> wrote:

> Hi all,
>
> So fixing HDivElement and HCurlElement works.
>
> Now, unrelated, I am getting some installation errors when installing
> firedrake on my University iMac (still on Yosemite). Attached is the output
> from --log.
>
> It seems this error is PETSc/HDF5/h5py related, and I can't seem to
> dissect what the error means. Can y'all understand what's going on or
> should I defer this to the PETSc folks?
>
> Thanks,
> Justin
>
> On Fri, Nov 20, 2015 at 11:44 AM, Justin Chang <jychang48 at gmail.com>
> wrote:
>
>> okay just did.
>>
>> On Fri, Nov 20, 2015 at 11:20 AM, Lawrence Mitchell <
>> lawrence.mitchell at imperial.ac.uk> wrote:
>>
>>>
>>> On 20 Nov 2015, at 17:15, Justin Chang <jychang48 at gmail.com> wrote:
>>>
>>> Hi all,
>>>
>>> Just the latest update, and got these errors when trying to output a
>>> solution that is in CG1 space:
>>>
>>> Traceback (most recent call last):
>>>
>>>   File "2D_OS_point_ex1.py", line 309, in <module>
>>>
>>>     outFile_psiA << u0_A
>>>
>>>   File "/Users/justin/Software/firedrake/src/firedrake/firedrake/io.py",
>>> line 110, in __lshift__
>>>
>>>     self._file << data
>>>
>>>   File "/Users/justin/Software/firedrake/src/firedrake/firedrake/io.py",
>>> line 524, in __lshift__
>>>
>>>     self._update_PVD(data)
>>>
>>>   File "/Users/justin/Software/firedrake/src/firedrake/firedrake/io.py",
>>> line 542, in _update_PVD
>>>
>>>     new_vtk << function
>>>
>>>   File "/Users/justin/Software/firedrake/src/firedrake/firedrake/io.py",
>>> line 188, in __lshift__
>>>
>>>     coords_p1 = is_family1(ce, 'Lagrange') or is_family1(ce, 'Q')
>>>
>>>   File "/Users/justin/Software/firedrake/src/firedrake/firedrake/io.py",
>>> line 157, in is_family1
>>>
>>>     if isinstance(e, (hc.HDiv, hc.HCurl)):
>>>
>>> AttributeError: 'module' object has no attribute 'HDiv'
>>>
>>>
>>>
>>> Oops, in firedrake/io.py change references to HDiv and HCurl into
>>> HDivElement and HCurlElement respectively. If you do this can you prepare a
>>> pull request?
>>>
>>>
>>> I noticed that there have been many updates/changes regarding UFL, so
>>> could this have something to do with it?
>>>
>>> On a side note, I also got these warnings:
>>>
>>> *Mesh.cell() is deprecated, please use .ufl_cell() instead.*
>>>
>>>
>>> Ah, this is harmless, I thought we'd changed all of these places but
>>> clearly there are a few left.
>>>
>>> Cheers,
>>>
>>> Lawrence
>>>
>>> _______________________________________________
>>> firedrake mailing list
>>> firedrake at imperial.ac.uk
>>> https://mailman.ic.ac.uk/mailman/listinfo/firedrake
>>>
>>>
>>
>
-------------- next part --------------
HTML attachment scrubbed and removed
-------------- next part --------------
A non-text attachment was scrubbed...
Name: firedrake-install.log
Type: application/octet-stream
Size: 643244 bytes
Desc: not available
URL: <http://mailman.ic.ac.uk/pipermail/firedrake/attachments/20151120/ed79a561/attachment.obj>