[firedrake] FD on mac

David Ham David.Ham at imperial.ac.uk
Wed Nov 25 12:03:02 GMT 2015


Hi all,

It turns out that this is a problem in PETSc caused by a "fix" to a
different OSX problem. We have reverted the offending commit on the
firedrake/petsc fork so hopefully updating now should fix the issue. Please
scream immediately if it does not.

Regards,

David

On Tue, 24 Nov 2015 at 22:23 David Ham <David.Ham at imperial.ac.uk> wrote:

> Reproduced. Very odd, it seems petsc4py is currently borked. I don't
> understand where this library location is coming from. It certainly isn't
> where the petsc python module reports the python being installed.
>
> On Tue, 24 Nov 2015 at 22:06 David Ham <David.Ham at imperial.ac.uk> wrote:
>
>> OK. I'm doing a scratch rebuild to see if I can reproduce this.
>>
>> David
>>
>> On Tue, 24 Nov 2015 at 21:33 Justin Chang <jychang48 at gmail.com> wrote:
>>
>>> Hi all,
>>>
>>> Just wanted to say that I am also now having these exact same issues as
>>> others after updating Firedrake on my mac.
>>>
>>> Thanks,
>>> Justin
>>>
>>> On Tue, Nov 24, 2015 at 6:11 AM, Lawrence Mitchell <
>>> lawrence.mitchell at imperial.ac.uk> wrote:
>>>
>>>>
>>>> On 23/11/15 16:52, Wingate, Beth wrote:
>>>> >     module = imp.load_module(fullname, fo, fn, stuff)
>>>> > ImportError:
>>>> >
>>>> dlopen(/Users/wingate/firedrake/lib/python2.7/site-packages/petsc4py/lib/PETSc.so,
>>>> > 2): Library not loaded:
>>>> >
>>>> /private/var/folders/rw/1wgmdvd50sv7bb1dksy4y_l00000gq/T/pip-DOH6bI-build/arch-python-macosx-10.11-x86_64/lib/libpetsc.3.06.dylib
>>>> >   Referenced from:
>>>> >
>>>> /Users/wingate/firedrake/lib/python2.7/site-packages/petsc4py/lib/PETSc.so
>>>> >   Reason: image not found
>>>>
>>>>
>>>> Hmph, petsc4py has linked against the temporary location of libpetsc
>>>> (which appeared via pip presumably), rather than its final location.
>>>>
>>>> It is not immediately obvious to me why this would be the case.  I do
>>>> not think it is likely anything wrong with your build setup though.
>>>>
>>>> Lawrence
>>>>
>>>>
>>>> _______________________________________________
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>>>>
>>>>
>>>
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