2021-03-10 13:01:05,999 INFO   Running firedrake-install -v
2021-03-10 13:01:06,008 DEBUG  Installer running with: /util/academic/firedrake/20210310-basic/anaconda3/bin/python3
2021-03-10 13:01:06,008 DEBUG  Python version: 3.8.5 (default, Sep  4 2020, 07:30:14) 
[GCC 7.3.0]
2021-03-10 13:01:06,008 DEBUG  *** Current environment (output of 'env') ***
2021-03-10 13:01:06,008 DEBUG  Running command 'env'
2021-03-10 13:01:06,014 DEBUG  MANPATH=/util/common/Lmod/lmod/lmod/share/man::
XDG_SESSION_ID=24286
HOSTNAME=srv-p22-13.cbls.ccr.buffalo.edu
TERM=xterm-256color
SHELL=/bin/bash
HISTSIZE=1000
MODULEPATH_ROOT=/util/common/modulefiles
SSH_CLIENT=10.60.1.16 36684 22
LMOD_PKG=/util/common/Lmod/lmod/lmod
OLDPWD=/projects/ccrstaff/cdc/tmp-home/home1
LMOD_VERSION=7.7
SSH_TTY=/dev/pts/43
__LMOD_REF_COUNT_LOADEDMODULES=python-firedrake:1;cmake/3.17.1:1
QT_GRAPHICSSYSTEM_CHECKED=1
USER=cdc
LMOD_sys=Linux
LS_COLORS=rs=0:di=38;5;27:ln=38;5;51:mh=44;38;5;15:pi=40;38;5;11:so=38;5;13:do=38;5;5:bd=48;5;232;38;5;11:cd=48;5;232;38;5;3:or=48;5;232;38;5;9:mi=05;48;5;232;38;5;15:su=48;5;196;38;5;15:sg=48;5;11;38;5;16:ca=48;5;196;38;5;226:tw=48;5;10;38;5;16:ow=48;5;10;38;5;21:st=48;5;21;38;5;15:ex=38;5;34:*.tar=38;5;9:*.tgz=38;5;9:*.arc=38;5;9:*.arj=38;5;9:*.taz=38;5;9:*.lha=38;5;9:*.lz4=38;5;9:*.lzh=38;5;9:*.lzma=38;5;9:*.tlz=38;5;9:*.txz=38;5;9:*.tzo=38;5;9:*.t7z=38;5;9:*.zip=38;5;9:*.z=38;5;9:*.Z=38;5;9:*.dz=38;5;9:*.gz=38;5;9:*.lrz=38;5;9:*.lz=38;5;9:*.lzo=38;5;9:*.xz=38;5;9:*.bz2=38;5;9:*.bz=38;5;9:*.tbz=38;5;9:*.tbz2=38;5;9:*.tz=38;5;9:*.deb=38;5;9:*.rpm=38;5;9:*.jar=38;5;9:*.war=38;5;9:*.ear=38;5;9:*.sar=38;5;9:*.rar=38;5;9:*.alz=38;5;9:*.ace=38;5;9:*.zoo=38;5;9:*.cpio=38;5;9:*.7z=38;5;9:*.rz=38;5;9:*.cab=38;5;9:*.jpg=38;5;13:*.jpeg=38;5;13:*.gif=38;5;13:*.bmp=38;5;13:*.pbm=38;5;13:*.pgm=38;5;13:*.ppm=38;5;13:*.tga=38;5;13:*.xbm=38;5;13:*.xpm=38;5;13:*.tif=38;5;13:*.tiff=38;5;13:*.png=38;5;13:*.svg=38;5;13:*.svgz=38;5;13:*.mng=38;5;13:*.pcx=38;5;13:*.mov=38;5;13:*.mpg=38;5;13:*.mpeg=38;5;13:*.m2v=38;5;13:*.mkv=38;5;13:*.webm=38;5;13:*.ogm=38;5;13:*.mp4=38;5;13:*.m4v=38;5;13:*.mp4v=38;5;13:*.vob=38;5;13:*.qt=38;5;13:*.nuv=38;5;13:*.wmv=38;5;13:*.asf=38;5;13:*.rm=38;5;13:*.rmvb=38;5;13:*.flc=38;5;13:*.avi=38;5;13:*.fli=38;5;13:*.flv=38;5;13:*.gl=38;5;13:*.dl=38;5;13:*.xcf=38;5;13:*.xwd=38;5;13:*.yuv=38;5;13:*.cgm=38;5;13:*.emf=38;5;13:*.axv=38;5;13:*.anx=38;5;13:*.ogv=38;5;13:*.ogx=38;5;13:*.aac=38;5;45:*.au=38;5;45:*.flac=38;5;45:*.mid=38;5;45:*.midi=38;5;45:*.mka=38;5;45:*.mp3=38;5;45:*.mpc=38;5;45:*.ogg=38;5;45:*.ra=38;5;45:*.wav=38;5;45:*.axa=38;5;45:*.oga=38;5;45:*.spx=38;5;45:*.xspf=38;5;45:
UTIL=/util
__LMOD_REF_COUNT__LMFILES_=/user/cdc/privatemodules/python-firedrake.lua:1;/util/common/modulefiles/Core/cmake/3.17.1.lua:1
_ModuleTable001_=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
MAIL=/var/spool/mail/cdc
PATH=/util/common/cmake/3.17.1/bin:/util/academic/firedrake/20210310-basic/anaconda3/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/usr/lpp/mmfs/bin:/opt/dell/srvadmin/bin:/user/cdc/bin
LMOD_SETTARG_CMD=:
PWD=/util/academic/firedrake/20210310-basic
_LMFILES_=/user/cdc/privatemodules/python-firedrake.lua:/util/common/modulefiles/Core/cmake/3.17.1.lua
LOCAL_SCRATCH=/scratch
LANG=en_US.UTF-8
MODULEPATH=/user/cdc/privatemodules:/util/common/modulefiles/Core:/util/academic/modulefiles/Core
LOADEDMODULES=python-firedrake:cmake/3.17.1
_ModuleTable_Sz_=2
LMOD_CMD=/util/common/Lmod/lmod/lmod/libexec/lmod
HISTCONTROL=ignoredups
SHLVL=1
HOME=/projects/ccrstaff/cdc/tmp-home/home1
__LMOD_REF_COUNT_PATH=/util/common/cmake/3.17.1/bin:1;/util/academic/firedrake/20210310-basic/anaconda3/bin:1;/usr/local/bin:1;/usr/bin:1;/usr/local/sbin:1;/usr/sbin:1;/usr/lpp/mmfs/bin:1;/opt/dell/srvadmin/bin:1;/user/cdc/bin:1
_ModuleTable002_=dWxsTmFtZSJdPSJweXRob24tZmlyZWRyYWtlIixbImxvYWRPcmRlciJdPTEscHJvcFQ9e30sWyJzdGFja0RlcHRoIl09MCxbInN0YXR1cyJdPSJhY3RpdmUiLFsidXNlck5hbWUiXT0icHl0aG9uLWZpcmVkcmFrZSIsfSx9LG1wYXRoQT17Ii91c2VyL2NkYy9wcml2YXRlbW9kdWxlcyIsIi91dGlsL2NvbW1vbi9tb2R1bGVmaWxlcy9Db3JlIiwiL3V0aWwvYWNhZGVtaWMvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvdXRpbC9jb21tb24vbW9kdWxlZmlsZXMvQ29yZTovdXRpbC9hY2FkZW1pYy9tb2R1bGVmaWxlcy9Db3JlIix9
BASH_ENV=/util/common/Lmod/lmod/lmod/init/bash
LOGNAME=cdc
SSH_CONNECTION=10.60.1.16 36684 10.116.22.13 22
MODULESHOME=/util/common/Lmod/lmod/lmod
GLOBAL_SCRATCH=/panasas/scratch
LESSOPEN=||/usr/bin/lesspipe.sh %s
LMOD_FULL_SETTARG_SUPPORT=no
XDG_RUNTIME_DIR=/run/user/5529
LMOD_DIR=/util/common/Lmod/lmod/lmod/libexec
BASH_FUNC_module()=() {  eval $($LMOD_CMD bash "$@") && eval $(${LMOD_SETTARG_CMD:-:} -s sh)
}
BASH_FUNC_ml()=() {  eval $($LMOD_DIR/ml_cmd "$@")
}
_=/util/academic/firedrake/20210310-basic/anaconda3/bin/python3

2021-03-10 13:01:06,014 DEBUG  


2021-03-10 13:01:06,015 INFO   apt-get not found or disabled. Proceeding on the rash assumption that your compiled dependencies are in place.
2021-03-10 13:01:06,015 INFO   Please use the --show-dependencies for more information.
2021-03-10 13:01:06,015 INFO   Creating firedrake venv in '/util/academic/firedrake/20210310-basic/firedrake'.
2021-03-10 13:01:16,560 DEBUG  Running command '/util/academic/firedrake/20210310-basic/firedrake/bin/python -m pip install -U setuptools'
2021-03-10 13:01:22,703 DEBUG  Collecting setuptools
  Using cached setuptools-54.1.1-py3-none-any.whl (784 kB)
Installing collected packages: setuptools
  Attempting uninstall: setuptools
    Found existing installation: setuptools 47.1.0
    Uninstalling setuptools-47.1.0:
      Successfully uninstalled setuptools-47.1.0
Successfully installed setuptools-54.1.1
WARNING: You are using pip version 20.1.1; however, version 21.0.1 is available.
You should consider upgrading via the '/util/academic/firedrake/20210310-basic/firedrake/bin/python -m pip install --upgrade pip' command.

2021-03-10 13:01:22,704 DEBUG  Running command '/util/academic/firedrake/20210310-basic/firedrake/bin/python -m pip install -U pip'
2021-03-10 13:01:34,784 DEBUG  Collecting pip
  Using cached pip-21.0.1-py3-none-any.whl (1.5 MB)
Installing collected packages: pip
  Attempting uninstall: pip
    Found existing installation: pip 20.1.1
    Uninstalling pip-20.1.1:
      Successfully uninstalled pip-20.1.1
Successfully installed pip-21.0.1

2021-03-10 13:01:34,785 DEBUG  Running command '/util/academic/firedrake/20210310-basic/firedrake/bin/python -m pip install -U wheel'
2021-03-10 13:01:36,725 DEBUG  Collecting wheel
  Using cached wheel-0.36.2-py2.py3-none-any.whl (35 kB)
Installing collected packages: wheel
Successfully installed wheel-0.36.2

2021-03-10 13:01:36,726 DEBUG  Creating a wrapper for mpicc from /util/academic/firedrake/20210310-basic/firedrake/src/petsc/default/bin/mpicc to /util/academic/firedrake/20210310-basic/firedrake/bin/mpicc
2021-03-10 13:01:36,733 DEBUG  Creating a wrapper for mpicxx from /util/academic/firedrake/20210310-basic/firedrake/src/petsc/default/bin/mpicxx to /util/academic/firedrake/20210310-basic/firedrake/bin/mpicxx
2021-03-10 13:01:36,739 DEBUG  Creating a wrapper for mpif90 from /util/academic/firedrake/20210310-basic/firedrake/src/petsc/default/bin/mpif90 to /util/academic/firedrake/20210310-basic/firedrake/bin/mpif90
2021-03-10 13:01:36,746 DEBUG  Creating a wrapper for mpiexec from /util/academic/firedrake/20210310-basic/firedrake/src/petsc/default/bin/mpiexec to /util/academic/firedrake/20210310-basic/firedrake/bin/mpiexec
2021-03-10 13:01:36,761 INFO   Configuration saved to /util/academic/firedrake/20210310-basic/firedrake/.configuration.json
2021-03-10 13:01:36,766 INFO   Cloning firedrake

2021-03-10 13:01:36,767 DEBUG  Running command 'git clone -q --recursive git@github.com:firedrakeproject/firedrake.git'
2021-03-10 13:02:02,178 DEBUG  Host key verification failed.
fatal: Could not read from remote repository.

Please make sure you have the correct access rights
and the repository exists.

2021-03-10 13:02:02,179 WARNING Failed to clone firedrake using ssh, falling back to https.
2021-03-10 13:02:02,179 DEBUG  Running command 'git clone -q --recursive https://github.com/firedrakeproject/firedrake.git'
2021-03-10 13:02:16,720 DEBUG  
2021-03-10 13:02:16,720 INFO   Successfully cloned repository firedrake.
2021-03-10 13:02:16,720 DEBUG  Old path '/util/academic/firedrake/20210310-basic/firedrake/src'
2021-03-10 13:02:16,720 DEBUG  Pushing path '/util/academic/firedrake/20210310-basic/firedrake/src/firedrake'
2021-03-10 13:02:16,721 INFO   Checking out branch master
2021-03-10 13:02:16,721 DEBUG  Running command 'git checkout -q master'
2021-03-10 13:02:16,941 DEBUG  
2021-03-10 13:02:16,942 INFO   Successfully checked out branch master
2021-03-10 13:02:16,942 INFO   Updating submodules.
2021-03-10 13:02:16,942 DEBUG  Running command 'git submodule update --recursive'
2021-03-10 13:02:17,024 DEBUG  
2021-03-10 13:02:17,025 INFO   Successfully updated submodules.
2021-03-10 13:02:17,025 DEBUG  Popping path '/util/academic/firedrake/20210310-basic/firedrake/src/firedrake'
2021-03-10 13:02:17,025 DEBUG  New path '/util/academic/firedrake/20210310-basic/firedrake/src'
2021-03-10 13:02:17,025 INFO   Creating firedrake-update script.
2021-03-10 13:02:17,033 DEBUG  Running command 'chmod a+x ../bin/firedrake-update'
2021-03-10 13:02:17,039 DEBUG  
2021-03-10 13:02:17,040 INFO   Cloning the dependencies of firedrake
2021-03-10 13:02:17,041 INFO   Cloning ufl

2021-03-10 13:02:17,041 DEBUG  Running command 'git clone -q --recursive git@github.com:firedrakeproject/ufl.git'
2021-03-10 13:02:23,067 DEBUG  Host key verification failed.
fatal: Could not read from remote repository.

Please make sure you have the correct access rights
and the repository exists.

2021-03-10 13:02:23,068 WARNING Failed to clone ufl using ssh, falling back to https.
2021-03-10 13:02:23,068 DEBUG  Running command 'git clone -q --recursive https://github.com/firedrakeproject/ufl.git'
2021-03-10 13:02:27,374 DEBUG  
2021-03-10 13:02:27,374 INFO   Successfully cloned repository ufl.
2021-03-10 13:02:27,374 DEBUG  Old path '/util/academic/firedrake/20210310-basic/firedrake/src'
2021-03-10 13:02:27,374 DEBUG  Pushing path '/util/academic/firedrake/20210310-basic/firedrake/src/ufl'
2021-03-10 13:02:27,374 INFO   Checking out branch master
2021-03-10 13:02:27,374 DEBUG  Running command 'git checkout -q master'
2021-03-10 13:02:27,472 DEBUG  
2021-03-10 13:02:27,472 INFO   Successfully checked out branch master
2021-03-10 13:02:27,472 INFO   Updating submodules.
2021-03-10 13:02:27,472 DEBUG  Running command 'git submodule update --recursive'
2021-03-10 13:02:27,550 DEBUG  
2021-03-10 13:02:27,551 INFO   Successfully updated submodules.
2021-03-10 13:02:27,551 DEBUG  Popping path '/util/academic/firedrake/20210310-basic/firedrake/src/ufl'
2021-03-10 13:02:27,551 DEBUG  New path '/util/academic/firedrake/20210310-basic/firedrake/src'
2021-03-10 13:02:27,551 INFO   Cloning fiat

2021-03-10 13:02:27,551 DEBUG  Running command 'git clone -q --recursive git@github.com:firedrakeproject/fiat.git'
2021-03-10 13:02:37,533 DEBUG  Host key verification failed.
fatal: Could not read from remote repository.

Please make sure you have the correct access rights
and the repository exists.

2021-03-10 13:02:37,533 WARNING Failed to clone fiat using ssh, falling back to https.
2021-03-10 13:02:37,534 DEBUG  Running command 'git clone -q --recursive https://github.com/firedrakeproject/fiat.git'
2021-03-10 13:02:40,103 DEBUG  
2021-03-10 13:02:40,104 INFO   Successfully cloned repository fiat.
2021-03-10 13:02:40,104 DEBUG  Old path '/util/academic/firedrake/20210310-basic/firedrake/src'
2021-03-10 13:02:40,104 DEBUG  Pushing path '/util/academic/firedrake/20210310-basic/firedrake/src/fiat'
2021-03-10 13:02:40,104 INFO   Checking out branch master
2021-03-10 13:02:40,104 DEBUG  Running command 'git checkout -q master'
2021-03-10 13:02:40,183 DEBUG  
2021-03-10 13:02:40,183 INFO   Successfully checked out branch master
2021-03-10 13:02:40,183 INFO   Updating submodules.
2021-03-10 13:02:40,183 DEBUG  Running command 'git submodule update --recursive'
2021-03-10 13:02:40,262 DEBUG  
2021-03-10 13:02:40,262 INFO   Successfully updated submodules.
2021-03-10 13:02:40,262 DEBUG  Popping path '/util/academic/firedrake/20210310-basic/firedrake/src/fiat'
2021-03-10 13:02:40,263 DEBUG  New path '/util/academic/firedrake/20210310-basic/firedrake/src'
2021-03-10 13:02:40,263 INFO   Cloning FInAT

2021-03-10 13:02:40,263 DEBUG  Running command 'git clone -q --recursive git@github.com:FInAT/FInAT.git'
2021-03-10 13:02:43,261 DEBUG  Host key verification failed.
fatal: Could not read from remote repository.

Please make sure you have the correct access rights
and the repository exists.

2021-03-10 13:02:43,261 WARNING Failed to clone FInAT using ssh, falling back to https.
2021-03-10 13:02:43,262 DEBUG  Running command 'git clone -q --recursive https://github.com/FInAT/FInAT.git'
2021-03-10 13:02:45,622 DEBUG  
2021-03-10 13:02:45,622 INFO   Successfully cloned repository FInAT.
2021-03-10 13:02:45,622 DEBUG  Old path '/util/academic/firedrake/20210310-basic/firedrake/src'
2021-03-10 13:02:45,622 DEBUG  Pushing path '/util/academic/firedrake/20210310-basic/firedrake/src/FInAT'
2021-03-10 13:02:45,622 INFO   Checking out branch master
2021-03-10 13:02:45,622 DEBUG  Running command 'git checkout -q master'
2021-03-10 13:02:45,729 DEBUG  
2021-03-10 13:02:45,729 INFO   Successfully checked out branch master
2021-03-10 13:02:45,729 INFO   Updating submodules.
2021-03-10 13:02:45,729 DEBUG  Running command 'git submodule update --recursive'
2021-03-10 13:02:45,810 DEBUG  
2021-03-10 13:02:45,811 INFO   Successfully updated submodules.
2021-03-10 13:02:45,811 DEBUG  Popping path '/util/academic/firedrake/20210310-basic/firedrake/src/FInAT'
2021-03-10 13:02:45,811 DEBUG  New path '/util/academic/firedrake/20210310-basic/firedrake/src'
2021-03-10 13:02:45,811 INFO   Cloning tsfc

2021-03-10 13:02:45,811 DEBUG  Running command 'git clone -q --recursive git@github.com:firedrakeproject/tsfc.git'
2021-03-10 13:02:49,407 DEBUG  Host key verification failed.
fatal: Could not read from remote repository.

Please make sure you have the correct access rights
and the repository exists.

2021-03-10 13:02:49,408 WARNING Failed to clone tsfc using ssh, falling back to https.
2021-03-10 13:02:49,408 DEBUG  Running command 'git clone -q --recursive https://github.com/firedrakeproject/tsfc.git'
2021-03-10 13:02:51,511 DEBUG  
2021-03-10 13:02:51,512 INFO   Successfully cloned repository tsfc.
2021-03-10 13:02:51,512 DEBUG  Old path '/util/academic/firedrake/20210310-basic/firedrake/src'
2021-03-10 13:02:51,512 DEBUG  Pushing path '/util/academic/firedrake/20210310-basic/firedrake/src/tsfc'
2021-03-10 13:02:51,512 INFO   Checking out branch master
2021-03-10 13:02:51,512 DEBUG  Running command 'git checkout -q master'
2021-03-10 13:02:51,605 DEBUG  
2021-03-10 13:02:51,606 INFO   Successfully checked out branch master
2021-03-10 13:02:51,606 INFO   Updating submodules.
2021-03-10 13:02:51,606 DEBUG  Running command 'git submodule update --recursive'
2021-03-10 13:02:51,689 DEBUG  
2021-03-10 13:02:51,689 INFO   Successfully updated submodules.
2021-03-10 13:02:51,690 DEBUG  Popping path '/util/academic/firedrake/20210310-basic/firedrake/src/tsfc'
2021-03-10 13:02:51,690 DEBUG  New path '/util/academic/firedrake/20210310-basic/firedrake/src'
2021-03-10 13:02:51,690 INFO   Cloning PyOP2

2021-03-10 13:02:51,690 DEBUG  Running command 'git clone -q --recursive git@github.com:OP2/PyOP2.git'
2021-03-10 13:03:20,152 DEBUG  Host key verification failed.
fatal: Could not read from remote repository.

Please make sure you have the correct access rights
and the repository exists.

2021-03-10 13:03:20,152 WARNING Failed to clone PyOP2 using ssh, falling back to https.
2021-03-10 13:03:20,152 DEBUG  Running command 'git clone -q --recursive https://github.com/OP2/PyOP2.git'
2021-03-10 13:03:23,865 DEBUG  
2021-03-10 13:03:23,866 INFO   Successfully cloned repository PyOP2.
2021-03-10 13:03:23,866 DEBUG  Old path '/util/academic/firedrake/20210310-basic/firedrake/src'
2021-03-10 13:03:23,866 DEBUG  Pushing path '/util/academic/firedrake/20210310-basic/firedrake/src/PyOP2'
2021-03-10 13:03:23,866 INFO   Checking out branch master
2021-03-10 13:03:23,866 DEBUG  Running command 'git checkout -q master'
2021-03-10 13:03:24,006 DEBUG  
2021-03-10 13:03:24,007 INFO   Successfully checked out branch master
2021-03-10 13:03:24,007 INFO   Updating submodules.
2021-03-10 13:03:24,007 DEBUG  Running command 'git submodule update --recursive'
2021-03-10 13:03:24,076 DEBUG  
2021-03-10 13:03:24,076 INFO   Successfully updated submodules.
2021-03-10 13:03:24,077 DEBUG  Popping path '/util/academic/firedrake/20210310-basic/firedrake/src/PyOP2'
2021-03-10 13:03:24,077 DEBUG  New path '/util/academic/firedrake/20210310-basic/firedrake/src'
2021-03-10 13:03:24,077 INFO   Cloning pyadjoint

2021-03-10 13:03:24,077 DEBUG  Running command 'git clone -q --recursive git@github.com:dolfin-adjoint/pyadjoint.git'
2021-03-10 13:03:27,269 DEBUG  Host key verification failed.
fatal: Could not read from remote repository.

Please make sure you have the correct access rights
and the repository exists.

2021-03-10 13:03:27,269 WARNING Failed to clone pyadjoint using ssh, falling back to https.
2021-03-10 13:03:27,269 DEBUG  Running command 'git clone -q --recursive https://github.com/dolfin-adjoint/pyadjoint.git'
2021-03-10 13:03:41,053 DEBUG  
2021-03-10 13:03:41,054 INFO   Successfully cloned repository pyadjoint.
2021-03-10 13:03:41,054 DEBUG  Old path '/util/academic/firedrake/20210310-basic/firedrake/src'
2021-03-10 13:03:41,054 DEBUG  Pushing path '/util/academic/firedrake/20210310-basic/firedrake/src/pyadjoint'
2021-03-10 13:03:41,054 INFO   Checking out branch master
2021-03-10 13:03:41,054 DEBUG  Running command 'git checkout -q master'
2021-03-10 13:03:41,354 DEBUG  
2021-03-10 13:03:41,354 INFO   Successfully checked out branch master
2021-03-10 13:03:41,354 INFO   Updating submodules.
2021-03-10 13:03:41,354 DEBUG  Running command 'git submodule update --recursive'
2021-03-10 13:03:41,439 DEBUG  
2021-03-10 13:03:41,439 INFO   Successfully updated submodules.
2021-03-10 13:03:41,439 DEBUG  Popping path '/util/academic/firedrake/20210310-basic/firedrake/src/pyadjoint'
2021-03-10 13:03:41,439 DEBUG  New path '/util/academic/firedrake/20210310-basic/firedrake/src'
2021-03-10 13:03:41,440 INFO   Cloning the dependencies of PyOP2
2021-03-10 13:03:41,441 INFO   Cloning petsc

2021-03-10 13:03:41,441 DEBUG  Running command 'git clone -q --recursive git@github.com:firedrakeproject/petsc.git'
2021-03-10 13:04:11,403 DEBUG  Host key verification failed.
fatal: Could not read from remote repository.

Please make sure you have the correct access rights
and the repository exists.

2021-03-10 13:04:11,404 WARNING Failed to clone petsc using ssh, falling back to https.
2021-03-10 13:04:11,404 DEBUG  Running command 'git clone -q --recursive https://github.com/firedrakeproject/petsc.git'
2021-03-10 13:06:15,500 DEBUG  
2021-03-10 13:06:15,500 INFO   Successfully cloned repository petsc.
2021-03-10 13:06:15,500 DEBUG  Old path '/util/academic/firedrake/20210310-basic/firedrake/src'
2021-03-10 13:06:15,500 DEBUG  Pushing path '/util/academic/firedrake/20210310-basic/firedrake/src/petsc'
2021-03-10 13:06:15,500 INFO   Checking out branch firedrake
2021-03-10 13:06:15,501 DEBUG  Running command 'git checkout -q firedrake'
2021-03-10 13:06:18,567 DEBUG  
2021-03-10 13:06:18,567 INFO   Successfully checked out branch firedrake
2021-03-10 13:06:18,567 INFO   Updating submodules.
2021-03-10 13:06:18,567 DEBUG  Running command 'git submodule update --recursive'
2021-03-10 13:06:18,695 DEBUG  
2021-03-10 13:06:18,695 INFO   Successfully updated submodules.
2021-03-10 13:06:18,695 DEBUG  Popping path '/util/academic/firedrake/20210310-basic/firedrake/src/petsc'
2021-03-10 13:06:18,695 DEBUG  New path '/util/academic/firedrake/20210310-basic/firedrake/src'
2021-03-10 13:06:18,695 INFO   Not cloning petsc4py from firedrake-project repo: using petsc4py in PETSc source tree.

2021-03-10 13:06:18,696 INFO   Cloning COFFEE

2021-03-10 13:06:18,696 DEBUG  Running command 'git clone -q --recursive git@github.com:coneoproject/COFFEE.git'
2021-03-10 13:09:16,556 DEBUG  Host key verification failed.
fatal: Could not read from remote repository.

Please make sure you have the correct access rights
and the repository exists.

2021-03-10 13:09:16,556 WARNING Failed to clone COFFEE using ssh, falling back to https.
2021-03-10 13:09:16,556 DEBUG  Running command 'git clone -q --recursive https://github.com/coneoproject/COFFEE.git'
2021-03-10 13:09:18,365 DEBUG  
2021-03-10 13:09:18,366 INFO   Successfully cloned repository COFFEE.
2021-03-10 13:09:18,366 DEBUG  Old path '/util/academic/firedrake/20210310-basic/firedrake/src'
2021-03-10 13:09:18,366 DEBUG  Pushing path '/util/academic/firedrake/20210310-basic/firedrake/src/COFFEE'
2021-03-10 13:09:18,366 INFO   Checking out branch master
2021-03-10 13:09:18,366 DEBUG  Running command 'git checkout -q master'
2021-03-10 13:09:18,456 DEBUG  
2021-03-10 13:09:18,456 INFO   Successfully checked out branch master
2021-03-10 13:09:18,456 INFO   Updating submodules.
2021-03-10 13:09:18,456 DEBUG  Running command 'git submodule update --recursive'
2021-03-10 13:09:18,506 DEBUG  
2021-03-10 13:09:18,506 INFO   Successfully updated submodules.
2021-03-10 13:09:18,506 DEBUG  Popping path '/util/academic/firedrake/20210310-basic/firedrake/src/COFFEE'
2021-03-10 13:09:18,506 DEBUG  New path '/util/academic/firedrake/20210310-basic/firedrake/src'
2021-03-10 13:09:18,506 INFO   Cloning loopy

2021-03-10 13:09:18,506 DEBUG  Running command 'git clone -q --recursive git@github.com:firedrakeproject/loopy.git'
2021-03-10 13:09:26,166 DEBUG  Host key verification failed.
fatal: Could not read from remote repository.

Please make sure you have the correct access rights
and the repository exists.

2021-03-10 13:09:26,167 WARNING Failed to clone loopy using ssh, falling back to https.
2021-03-10 13:09:26,167 DEBUG  Running command 'git clone -q --recursive https://github.com/firedrakeproject/loopy.git'
2021-03-10 13:09:31,478 DEBUG  Submodule 'loopy/target/c/compyte' (https://github.com/inducer/compyte) registered for path 'loopy/target/c/compyte'
Cloning into 'loopy/target/c/compyte'...
Submodule path 'loopy/target/c/compyte': checked out '7e48e1166a13cfbb7b60f909b071f088034ffda1'

2021-03-10 13:09:31,479 INFO   Successfully cloned repository loopy.
2021-03-10 13:09:31,479 DEBUG  Old path '/util/academic/firedrake/20210310-basic/firedrake/src'
2021-03-10 13:09:31,479 DEBUG  Pushing path '/util/academic/firedrake/20210310-basic/firedrake/src/loopy'
2021-03-10 13:09:31,479 INFO   Checking out branch firedrake
2021-03-10 13:09:31,479 DEBUG  Running command 'git checkout -q firedrake'
2021-03-10 13:09:31,645 DEBUG  
2021-03-10 13:09:31,645 INFO   Successfully checked out branch firedrake
2021-03-10 13:09:31,646 INFO   Updating submodules.
2021-03-10 13:09:31,646 DEBUG  Running command 'git submodule update --recursive'
2021-03-10 13:09:31,791 DEBUG  
2021-03-10 13:09:31,792 INFO   Successfully updated submodules.
2021-03-10 13:09:31,792 DEBUG  Popping path '/util/academic/firedrake/20210310-basic/firedrake/src/loopy'
2021-03-10 13:09:31,792 DEBUG  New path '/util/academic/firedrake/20210310-basic/firedrake/src'
2021-03-10 13:09:31,793 DEBUG  Running command '/util/academic/firedrake/20210310-basic/firedrake/bin/python -m pip install --no-build-isolation --no-binary mpi4py,randomgen,islpy,numpy,scipy -vvv Cython>=0.22'
2021-03-10 13:09:38,558 DEBUG  Using pip 21.0.1 from /util/academic/firedrake/20210310-basic/firedrake/lib/python3.8/site-packages/pip (python 3.8)
Non-user install because user site-packages disabled
Created temporary directory: /tmp/pip-ephem-wheel-cache-rr56d9ei
Created temporary directory: /tmp/pip-req-tracker-5yygcxmc
Initialized build tracking at /tmp/pip-req-tracker-5yygcxmc
Created build tracker: /tmp/pip-req-tracker-5yygcxmc
Entered build tracker: /tmp/pip-req-tracker-5yygcxmc
Created temporary directory: /tmp/pip-install-kmu0e4ar
1 location(s) to search for versions of cython:
* https://pypi.org/simple/cython/
Fetching project page and analyzing links: https://pypi.org/simple/cython/
Getting page https://pypi.org/simple/cython/
Found index url https://pypi.org/simple
Looking up "https://pypi.org/simple/cython/" in the cache
Request header has "max_age" as 0, cache bypassed
Starting new HTTPS connection (1): pypi.org:443
https://pypi.org:443 "GET /simple/cython/ HTTP/1.1" 304 0
  Found link https://files.pythonhosted.org/packages/72/fe/3351a0baece112c5abea843f3e55085acc52fcd0434c3ce35a119279df17/Cython-0.9.6.5.tar.gz#sha256=aa8243cf519c48cb2705e2326fae2f83b0d6712041b48d18550f5fab3580d725 (from https://pypi.org/simple/cython/), version: 0.9.6.5
  Found link https://files.pythonhosted.org/packages/d5/1e/46e561b76737bbb24a66ca48cbffe2a15f569a5058f46502307eec3e91a0/Cython-0.9.6.6.tar.gz#sha256=6df7df83f77a3c98032631897bd3b4da864dca8f31afb4c219f1a5539ed60009 (from https://pypi.org/simple/cython/), version: 0.9.6.6
  Found link https://files.pythonhosted.org/packages/ec/89/a9a2b90665350fc00dc56b610e34c7ac12def0da2477b359f151dd541975/Cython-0.9.6.7.tar.gz#sha256=8c2132881775962ed0d74e578d1ba6ff1c632b687a19ee685f63a7aa1bcc46bf (from https://pypi.org/simple/cython/), version: 0.9.6.7
  Found link https://files.pythonhosted.org/packages/63/65/d45471d4dfffb203f8007a0b3c8be1208cec37f79c324e210669d3e476ea/Cython-0.9.6.8.tar.gz#sha256=ee3840b90549755bdd2eaf2cc24758360dadb6dfa2b6245a0216d0c5d4896be2 (from https://pypi.org/simple/cython/), version: 0.9.6.8
  Found link https://files.pythonhosted.org/packages/30/a5/6071362f1cf697cbe2ca25f0f95b7ac7fe1672dc68ed6a0b9e9228670c8c/Cython-0.9.6.10b.tar.gz#sha256=c98307edf8fe988000f23f5d3ccc5d975d5f7b1ae9acfd3052665570c2be84ce (from https://pypi.org/simple/cython/), version: 0.9.6.10b
  Found link https://files.pythonhosted.org/packages/15/36/c6ad81f1aca04465cdaa00569f0872095ac76ba6cf2ca80e7be30a43f93d/Cython-0.9.6.10.tar.gz#sha256=2c381a17efacde2241cf66568b780a6a418cacbe3ccc900c32be8a31537b5f08 (from https://pypi.org/simple/cython/), version: 0.9.6.10
  Found link https://files.pythonhosted.org/packages/10/ff/14b46ca6de7e8a22a16791f0408cc543de265c32aa4d9f6a32c07c8bd1a6/Cython-0.9.6.10.1.tar.gz#sha256=609967193331d72f84927fecb70f3a2c050aab114fe041916d6b45df13b9f6d6 (from https://pypi.org/simple/cython/), version: 0.9.6.10.1
  Found link https://files.pythonhosted.org/packages/17/a4/969951e4fe5f5b9b2d22c71b2c3b716c544333246fdf3c709dd325bab497/Cython-0.9.6.11b.tar.gz#sha256=d1be91f1221273f2a67582037fa17056d3b4631a9d9e046c1481360154bd1d77 (from https://pypi.org/simple/cython/), version: 0.9.6.11b
  Found link https://files.pythonhosted.org/packages/37/2d/c21cb7845479381c0d535922f53a0fd84a910252fe9432606955de6b14bf/Cython-0.9.6.11.tar.gz#sha256=c7581722c8956377761be12f5fea03f7e5707b54d76a086e62bdff5afd76eb3b (from https://pypi.org/simple/cython/), version: 0.9.6.11
  Found link https://files.pythonhosted.org/packages/a4/aa/bb3d78a8da33029746a82f3ce1ce472320c2f75102c8deb8ed9a577f473b/Cython-0.9.6.12.tar.gz#sha256=108f67d840e3eaa45b649db00ca0dc623b49a34c156ac75ee9f67f1836c3424f (from https://pypi.org/simple/cython/), version: 0.9.6.12
  Found link https://files.pythonhosted.org/packages/98/2e/300c48c8e7a6998a1f93a3e71ea3e019dbef01b68b4f1aa5838ed659f8c1/Cython-0.9.6.13.tar.gz#sha256=579bc89867fb3adc052a658df84356a14bfe21041f02863665a6d3a2d9d6a4a9 (from https://pypi.org/simple/cython/), version: 0.9.6.13
  Found link https://files.pythonhosted.org/packages/88/0d/7500f6e1efbd6f00e18e332454335214f7b4592a517c1ba2ba7d0ede3248/Cython-0.9.6.13.1.tar.gz#sha256=ee553f484b53cb27ec7a5dcf70b3d8e4b945b9dd51aac6358019396aefee6601 (from https://pypi.org/simple/cython/), version: 0.9.6.13.1
  Found link https://files.pythonhosted.org/packages/13/d9/27ec736179ba3cb8eb49182fc9396460e40646dc5e0cbc25c1505e46e1ca/Cython-0.9.6.14.tar.gz#sha256=dde5d254cd00e4182680b1241e9a5feebbc9b4887f5d0bac2ba2935f213c97e7 (from https://pypi.org/simple/cython/), version: 0.9.6.14
  Found link https://files.pythonhosted.org/packages/95/51/a0f33e6a46c05d9ab21d0035e6305bff89d8c23da5d94b7169adaaaca72d/Cython-0.9.8.tar.gz#sha256=0605dcf587544e049626a54f7ad5ab84ccf31fef20c0125852abca74bae79d25 (from https://pypi.org/simple/cython/), version: 0.9.8
  Found link https://files.pythonhosted.org/packages/c3/53/e8c1ae1d9723a9015d41e284dddcae0e83d91e02d74c2af3b27a0967f572/Cython-0.9.8.1.tar.gz#sha256=3991a33a5556475598a4a515ba0a2b958d5475298e68d9ef508e4441b41936b3 (from https://pypi.org/simple/cython/), version: 0.9.8.1
  Found link https://files.pythonhosted.org/packages/a3/59/f929ec1a9f40eedb6906f26809aaadc7ded96d57c592b16116de3e10241b/Cython-0.9.8.1.1.tar.gz#sha256=2d00a2cc1ae53039c2d13c3a5c433de688cb93fb963e25d4cc51966dcccbd689 (from https://pypi.org/simple/cython/), version: 0.9.8.1.1
  Found link https://files.pythonhosted.org/packages/10/22/c7188528b6ee79efa5a8d2c0b9f5a9513addf1b56b0dc1e721aab9e96c21/Cython-0.10.tar.gz#sha256=09643312a0f9545f2eafe4c61aa786c1147e18f19faf26c7f50b05f553b73d38 (from https://pypi.org/simple/cython/), version: 0.10
  Found link https://files.pythonhosted.org/packages/1c/52/b01f5eb38334eab2088c3acd30c50c18037d2b9993243b6b79d70f80be2d/Cython-0.10.1.tar.gz#sha256=6147a08786691db0dedaee5259c8f3551456d332f6e2b99515a1c5a07aa5b25f (from https://pypi.org/simple/cython/), version: 0.10.1
  Found link https://files.pythonhosted.org/packages/93/c2/5050250f178148876d43237f7edf7a30d3f356b40cebd3f8589a87c4c39c/Cython-0.10.2.tar.gz#sha256=c84977d63fca5fbc166b7920c30e35aeee41c1551615e0ed845d4bf9f660470d (from https://pypi.org/simple/cython/), version: 0.10.2
  Found link https://files.pythonhosted.org/packages/3a/06/668437cf1b11bf15c06555c7598e2ca3dd535192113470887b698448c5c4/Cython-0.10.3.tar.gz#sha256=a9ac41b270743c067456272a1a0c788008b41f64f388488dfbac54e2a78303b8 (from https://pypi.org/simple/cython/), version: 0.10.3
  Found link https://files.pythonhosted.org/packages/c9/01/3417b3b6c6c9197eac1cd0958f0bf8a7aebd674a587157f4250e75160f42/Cython-0.11.tar.gz#sha256=eebcd64935dde5b5a78f8398e72665a3661e0173d23f253fa409e04f1c1a7ff6 (from https://pypi.org/simple/cython/), version: 0.11
  Found link https://files.pythonhosted.org/packages/9c/e6/78c59992adf497a1e43ee49966b35481152953c3483f981f4b4094c051ae/Cython-0.11.1.tar.gz#sha256=0a8103de967e8bd43aabe0a4844e051b8eadeee3853e2d40c63bc67dd8326455 (from https://pypi.org/simple/cython/), version: 0.11.1
  Found link https://files.pythonhosted.org/packages/82/ec/458d6dad8f5b787516bdb72fba604b10ed09e54d3ca8c050abba82e62872/Cython-0.11.2.tar.gz#sha256=ee2aca7d876dd0a3be589a30fda724a23f5d110d224cab0eef46f122f0003f12 (from https://pypi.org/simple/cython/), version: 0.11.2
  Found link https://files.pythonhosted.org/packages/ca/85/f119735bb28ec49ac7d5cbbe0d5b014ab714ed86ab2bb5ec4a2f09b3f8a2/Cython-0.11.3.tar.gz#sha256=5a807fb1bbda664aedd953b776d49a3bcbbc21ffe17a41ff574da6e2ff197f79 (from https://pypi.org/simple/cython/), version: 0.11.3
  Found link https://files.pythonhosted.org/packages/e1/ea/c53bbcd6d11579df558b7122fdcb94e2acad04f0c2c3ae00e9ac311f16aa/Cython-0.12.tar.gz#sha256=90d611aeff8d017a5ccca3b1e02ec8d6dd0efc7dfd29806f721bc718d3774ea3 (from https://pypi.org/simple/cython/), version: 0.12
  Found link https://files.pythonhosted.org/packages/8e/d6/289f265e025c78ea6cb1e6aedb272c3c9aac8a406eef66822f16d5f6831c/Cython-0.12.1.tar.gz#sha256=0f384ec20c579b80d1960a5795d6517a6885305efa9964bcbf6a7b8da88b9c77 (from https://pypi.org/simple/cython/), version: 0.12.1
  Found link https://files.pythonhosted.org/packages/aa/2d/5d29acc1e0c001e21a2cef8b36f25e8475edc9348fe0d1bd6e5b7f0d3788/Cython-0.13.tar.gz#sha256=238a1ad0b72a909aef866791d285121b7f0d7c8753a1d45e4ba49da8c7bbbb9a (from https://pypi.org/simple/cython/), version: 0.13
  Found link https://files.pythonhosted.org/packages/22/7d/7415041ccf99c78322497823069dc0ec0df3ac47481b523fd5c63d83791e/Cython-0.14.tar.gz#sha256=74be47681103d6e050fd5b4bd130b9cfdad039ec1416fd69b6aa91a1d8ac578b (from https://pypi.org/simple/cython/), version: 0.14
  Found link https://files.pythonhosted.org/packages/1d/01/9655ca6f4f069e6fa30a58e56b631de18036fd878cc42c3ec3eaaf3c9072/Cython-0.14.1.tar.gz#sha256=89e3f64ea0f97cd29b28d0831a7022dc1f8cf4ffb7be52b9f2fc4b5dcf9243c7 (from https://pypi.org/simple/cython/), version: 0.14.1
  Found link https://files.pythonhosted.org/packages/24/4e/55bda97d0906c4fa766dda87165c3652df3d2ce62aba3f33612cc92bf4f3/Cython-0.15.tar.gz#sha256=059775c832014d5e2550e0293fd1bfdc9330ebc98b844a86d4ae6251fde8fee7 (from https://pypi.org/simple/cython/), version: 0.15
  Found link https://files.pythonhosted.org/packages/f7/e8/5e58ad206d04e15baa24b11f3562256ce5d4476c959b69024d426b300f39/Cython-0.15.1.tar.gz#sha256=248123f2f02f2701a28d9452132ac835533b396a273cda9d361cb65c26067edc (from https://pypi.org/simple/cython/), version: 0.15.1
  Found link https://files.pythonhosted.org/packages/ba/f6/1e4449f53a1fa84a694d8006ce07c935037975e327722190085e5b768562/Cython-0.16.tar.gz#sha256=971651fc5d3c943b0ecf7bc4df86a977bf62623d94542bf2aaa5f7223697e6fb (from https://pypi.org/simple/cython/), version: 0.16
  Skipping link: none of the wheel's tags match: cp26-cp26mu-manylinux1_x86_64: https://files.pythonhosted.org/packages/c2/b0/83750b90ee3a65b944c67e2336fccb0486a1bca5c89e6c5f15cf640c88e7/Cython-0.17-cp26-cp26mu-manylinux1_x86_64.whl#sha256=d1f5acfe783f3dee12d0d554827c5fdc2ea58aab5902c35ae255ed7cde95cc52 (from https://pypi.org/simple/cython/)
  Skipping link: none of the wheel's tags match: cp27-cp27m-manylinux1_x86_64: https://files.pythonhosted.org/packages/9e/35/5c2942f66193d57c0747a5e09a0e5703cd6e3a0fe1d00b80257f3367c33c/Cython-0.17-cp27-cp27m-manylinux1_x86_64.whl#sha256=b638c5f2a235ee9c8045c3f8725be8fc7d226a0bce8de7ec9c0757947a9cf03f (from https://pypi.org/simple/cython/)
  Skipping link: none of the wheel's tags match: cp27-cp27mu-manylinux1_x86_64: https://files.pythonhosted.org/packages/e7/67/574c341c14825a548b45d03039a62c3fb0524c2ce5b67a2bf31a2c49370b/Cython-0.17-cp27-cp27mu-manylinux1_x86_64.whl#sha256=d17bf98d2311ba6c1b3dceaa591dc3a7cc4940652336eed4e637042422a4822d (from https://pypi.org/simple/cython/)
  Skipping link: none of the wheel's tags match: cp33-cp33m-manylinux1_x86_64: https://files.pythonhosted.org/packages/f4/cc/970b8bb98884eeeb6a9fbee736b6e5acc02351faf01b90be1fe8f501c6ed/Cython-0.17-cp33-cp33m-manylinux1_x86_64.whl#sha256=88c70afdb1740173b9d0a2b9c321227b0cda262ecbfc4d628508c2e49622abfb (from https://pypi.org/simple/cython/)
  Skipping link: none of the wheel's tags match: cp34-cp34m-manylinux1_x86_64: https://files.pythonhosted.org/packages/d6/4e/b6337b243d97bd171d48625f0eccbe12c7d6fdf512a18a14bfe7e29d52f5/Cython-0.17-cp34-cp34m-manylinux1_x86_64.whl#sha256=3b76afeb8d1c3034266e99a224d4655b4efdbc1be095dcb2d920025547067b4d (from https://pypi.org/simple/cython/)
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Collecting Cython>=0.22
  Created temporary directory: /tmp/pip-unpack-wpxsj0i1
  Looking up "https://files.pythonhosted.org/packages/f9/f4/3a950e0146569f405ac3ea1233dc08bb2e2286cb7356de866807fde94f39/Cython-0.29.22-cp38-cp38-manylinux1_x86_64.whl" in the cache
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  The response is "fresh", returning cached response
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  Using cached Cython-0.29.22-cp38-cp38-manylinux1_x86_64.whl (1.9 MB)
  Added Cython>=0.22 from https://files.pythonhosted.org/packages/f9/f4/3a950e0146569f405ac3ea1233dc08bb2e2286cb7356de866807fde94f39/Cython-0.29.22-cp38-cp38-manylinux1_x86_64.whl#sha256=b53c9d7b545c70f462408000affdd330cb87d05f83a58a9ccd72d19c8df80d56 to build tracker '/tmp/pip-req-tracker-5yygcxmc'
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Created temporary directory: /tmp/pip-unpack-rhyd1oxn
Installing collected packages: Cython

  changing mode of /util/academic/firedrake/20210310-basic/firedrake/bin/cygdb to 775
  changing mode of /util/academic/firedrake/20210310-basic/firedrake/bin/cython to 775
  changing mode of /util/academic/firedrake/20210310-basic/firedrake/bin/cythonize to 775
Successfully installed Cython-0.29.22
Removed build tracker: '/tmp/pip-req-tracker-5yygcxmc'

2021-03-10 13:09:38,563 DEBUG  Running command '/util/academic/firedrake/20210310-basic/firedrake/bin/python -m pip install --no-build-isolation --no-binary mpi4py,randomgen,islpy,numpy,scipy -vvv pybind11'
2021-03-10 13:09:40,191 DEBUG  Using pip 21.0.1 from /util/academic/firedrake/20210310-basic/firedrake/lib/python3.8/site-packages/pip (python 3.8)
Non-user install because user site-packages disabled
Created temporary directory: /tmp/pip-ephem-wheel-cache-365xwbk2
Created temporary directory: /tmp/pip-req-tracker-cwki8nm0
Initialized build tracking at /tmp/pip-req-tracker-cwki8nm0
Created build tracker: /tmp/pip-req-tracker-cwki8nm0
Entered build tracker: /tmp/pip-req-tracker-cwki8nm0
Created temporary directory: /tmp/pip-install-3o4vcl5o
1 location(s) to search for versions of pybind11:
* https://pypi.org/simple/pybind11/
Fetching project page and analyzing links: https://pypi.org/simple/pybind11/
Getting page https://pypi.org/simple/pybind11/
Found index url https://pypi.org/simple
Looking up "https://pypi.org/simple/pybind11/" in the cache
Request header has "max_age" as 0, cache bypassed
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  Found link https://files.pythonhosted.org/packages/7a/32/a698ba4f25d5ab0eb450f8c387949315f0ad91eba555d7f37079639291ae/pybind11-2.6.0rc2.tar.gz#sha256=f9ba20fee8660f906b190dc45cb15acc47ae42576d1a2b5b354447cf8314c4ba (from https://pypi.org/simple/pybind11/) (requires-python:!=3.0,!=3.1,!=3.2,!=3.3,!=3.4,>=2.7), version: 2.6.0rc2
  Found link https://files.pythonhosted.org/packages/fb/55/15c31b01a7905911e10b085394e9d40a2c2707a47e148ba099e9b7077a31/pybind11-2.6.0rc3-py2.py3-none-any.whl#sha256=a476244dc96920320df0149ddabec827fee93bbd44dd2953225a0b63f74a4c3c (from https://pypi.org/simple/pybind11/) (requires-python:!=3.0,!=3.1,!=3.2,!=3.3,!=3.4,>=2.7), version: 2.6.0rc3
  Found link https://files.pythonhosted.org/packages/ec/96/bc203a96726a6c7bdf53e0c3bbf1a2f64c14d2c901c73eecebfe4961e814/pybind11-2.6.0rc3.tar.gz#sha256=5473b68eac2bf4e488fffb4120324e927faf3777556d9752b94f5b6667af5aa4 (from https://pypi.org/simple/pybind11/) (requires-python:!=3.0,!=3.1,!=3.2,!=3.3,!=3.4,>=2.7), version: 2.6.0rc3
  Found link https://files.pythonhosted.org/packages/92/a5/796ccb611a92cbdf1f6eaa9b2ec9458d5784a7b909efdf8e8afaa3861783/pybind11-2.6.0-py2.py3-none-any.whl#sha256=4ddeee54adf844ce44801c32a61e1863dd79283a5ce7afbb96e05fe61fa1fd7d (from https://pypi.org/simple/pybind11/) (requires-python:!=3.0,!=3.1,!=3.2,!=3.3,!=3.4,>=2.7), version: 2.6.0
  Found link https://files.pythonhosted.org/packages/9a/36/3a9de7b56e0b01689d9ca4658701d12941069940f8a1431597a48dbc53fa/pybind11-2.6.0.tar.gz#sha256=4107de1fd612bf52953fd64dab7f94f11d2ab3548e1b761cbf8ebc87a2480912 (from https://pypi.org/simple/pybind11/) (requires-python:!=3.0,!=3.1,!=3.2,!=3.3,!=3.4,>=2.7), version: 2.6.0
  Found link https://files.pythonhosted.org/packages/00/84/fc9dc13ee536ba5e6b8fd10ce368fea5b738fe394c3b296cde7c9b144a92/pybind11-2.6.1-py2.py3-none-any.whl#sha256=c3691da74b670a4850dec30c1145a0dad53a50eeca78b7e7cdc855b5c98fd32d (from https://pypi.org/simple/pybind11/) (requires-python:!=3.0,!=3.1,!=3.2,!=3.3,!=3.4,>=2.7), version: 2.6.1
  Found link https://files.pythonhosted.org/packages/d8/47/2eb4be23fa8cc1a08c855c012c1aa4348d06ab1a5527f876515bbf689644/pybind11-2.6.1.tar.gz#sha256=ab7e60a520fe6ae25eca939191bb2ac416cd58478ce754740238a8bf1af18934 (from https://pypi.org/simple/pybind11/) (requires-python:!=3.0,!=3.1,!=3.2,!=3.3,!=3.4,>=2.7), version: 2.6.1
  Found link https://files.pythonhosted.org/packages/8d/43/7339dbabbc2793718d59703aace4166f53c29ee1c202f6ff5bf8a26c4d91/pybind11-2.6.2-py2.py3-none-any.whl#sha256=2d8aebe1709bc367e34e3b23d8eccbf3f387ee9d5640548c6260d33b59f02405 (from https://pypi.org/simple/pybind11/) (requires-python:!=3.0,!=3.1,!=3.2,!=3.3,!=3.4,>=2.7), version: 2.6.2
  Found link https://files.pythonhosted.org/packages/46/0e/3131a9ae6e6cd1d718cfdd3e2c25f681f2db29be30763aa54b9310de5fea/pybind11-2.6.2.tar.gz#sha256=d0e0aed9279656f21501243b707eb6e3b951e89e10c3271dedf3ae41c365e5ed (from https://pypi.org/simple/pybind11/) (requires-python:!=3.0,!=3.1,!=3.2,!=3.3,!=3.4,>=2.7), version: 2.6.2
Given no hashes to check 52 links for project 'pybind11': discarding no candidates
Collecting pybind11
  Created temporary directory: /tmp/pip-unpack-4_2kv722
  Looking up "https://files.pythonhosted.org/packages/8d/43/7339dbabbc2793718d59703aace4166f53c29ee1c202f6ff5bf8a26c4d91/pybind11-2.6.2-py2.py3-none-any.whl" in the cache
  Current age based on date: 1762
  Ignoring unknown cache-control directive: immutable
  Freshness lifetime from max-age: 365000000
  The response is "fresh", returning cached response
  365000000 > 1762
  Using cached pybind11-2.6.2-py2.py3-none-any.whl (191 kB)
  Added pybind11 from https://files.pythonhosted.org/packages/8d/43/7339dbabbc2793718d59703aace4166f53c29ee1c202f6ff5bf8a26c4d91/pybind11-2.6.2-py2.py3-none-any.whl#sha256=2d8aebe1709bc367e34e3b23d8eccbf3f387ee9d5640548c6260d33b59f02405 to build tracker '/tmp/pip-req-tracker-cwki8nm0'
  Removed pybind11 from https://files.pythonhosted.org/packages/8d/43/7339dbabbc2793718d59703aace4166f53c29ee1c202f6ff5bf8a26c4d91/pybind11-2.6.2-py2.py3-none-any.whl#sha256=2d8aebe1709bc367e34e3b23d8eccbf3f387ee9d5640548c6260d33b59f02405 from build tracker '/tmp/pip-req-tracker-cwki8nm0'
Created temporary directory: /tmp/pip-unpack-qxz8f0ft
Installing collected packages: pybind11

  changing mode of /util/academic/firedrake/20210310-basic/firedrake/bin/pybind11-config to 775
Successfully installed pybind11-2.6.2
Removed build tracker: '/tmp/pip-req-tracker-cwki8nm0'

2021-03-10 13:09:40,192 INFO   Installing petsc/
2021-03-10 13:09:40,261 INFO   Downloading Eigen from 'https://github.com/eigenteam/eigen-git-mirror/archive/3.3.3.tar.gz' to 'eigen-3.3.3.tgz'
2021-03-10 13:09:40,979 INFO   Checking Eigen tarball integrity
2021-03-10 13:09:40,999 INFO   Eigen tarball hash valid
2021-03-10 13:09:40,999 INFO   Depending on your platform, PETSc may take an hour or more to build!
2021-03-10 13:09:40,999 DEBUG  Old path '/util/academic/firedrake/20210310-basic/firedrake/src'
2021-03-10 13:09:40,999 DEBUG  Pushing path '/util/academic/firedrake/20210310-basic/firedrake/src/petsc'
2021-03-10 13:09:41,000 DEBUG  Running command 'rm -rf /util/academic/firedrake/20210310-basic/firedrake/src/petsc/default'
2021-03-10 13:09:41,006 DEBUG  
2021-03-10 13:09:41,007 DEBUG  Running command '/util/academic/firedrake/20210310-basic/firedrake/bin/python ./configure PETSC_DIR=/util/academic/firedrake/20210310-basic/firedrake/src/petsc PETSC_ARCH=default --with-cxx-dialect=C++11 --download-hwloc --with-shared-libraries=1 --download-mumps --download-netcdf --download-scalapack --download-ptscotch --download-hypre --download-hdf5 --download-ml --with-c2html=0 --download-superlu_dist --with-debugging=0 --download-pastix --download-metis --download-suitesparse --download-pnetcdf --with-zlib --with-fortran-bindings=0 --download-eigen=/util/academic/firedrake/20210310-basic/firedrake/src/eigen-3.3.3.tgz  --download-chaco --download-mpich'
2021-03-10 13:37:20,779 DEBUG  ===============================================================================
             Configuring PETSc to compile on your system                       
===============================================================================
TESTING: configureExternalPackagesDir from config.framework(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/framework.py:965)
TESTING: configureDebuggers from config.utilities.debuggers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/utilities/debuggers.py:21)
TESTING: configureDirectories from PETSc.options.petscdir(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/PETSc/options/petscdir.py:23)
TESTING: getDatafilespath from PETSc.options.dataFilesPath(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/PETSc/options/dataFilesPath.py:29)
TESTING: configureGit from config.sourceControl(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/sourceControl.py:24)
TESTING: configureMercurial from config.sourceControl(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/sourceControl.py:35)
TESTING: configureInstallationMethod from PETSc.options.petscclone(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/PETSc/options/petscclone.py:20)
TESTING: setNativeArchitecture from PETSc.options.arch(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/PETSc/options/arch.py:31)
TESTING: configureArchitecture from PETSc.options.arch(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/PETSc/options/arch.py:43)
TESTING: setInstallDir from PETSc.options.installDir(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/PETSc/options/installDir.py:39)
TESTING: saveReconfigure from PETSc.options.installDir(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/PETSc/options/installDir.py:85)
TESTING: cleanConfDir from PETSc.options.installDir(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/PETSc/options/installDir.py:78)
TESTING: configureInstallDir from PETSc.options.installDir(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/PETSc/options/installDir.py:62)
TESTING: restoreReconfigure from PETSc.options.installDir(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/PETSc/options/installDir.py:98)
TESTING: setExternalPackagesDir from PETSc.options.externalpackagesdir(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/PETSc/options/externalpackagesdir.py:15)
TESTING: cleanExternalpackagesDir from PETSc.options.externalpackagesdir(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/PETSc/options/externalpackagesdir.py:22)
TESTING: configureCLanguage from PETSc.options.languages(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/PETSc/options/languages.py:27)
TESTING: resetEnvCompilers from config.setCompilers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/setCompilers.py:1932)
TESTING: checkEnvCompilers from config.setCompilers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/setCompilers.py:1962)
TESTING: checkMPICompilerOverride from config.setCompilers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/setCompilers.py:1902)
TESTING: requireMpiLdPath from config.setCompilers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/setCompilers.py:1923)
TESTING: checkInitialFlags from config.setCompilers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/setCompilers.py:514)
TESTING: checkCCompiler from config.setCompilers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/setCompilers.py:689)
TESTING: checkCPreprocessor from config.setCompilers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/setCompilers.py:728)
TESTING: checkCUDACompiler from config.setCompilers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/setCompilers.py:764)
TESTING: checkCUDAPreprocessor from config.setCompilers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/setCompilers.py:804)
TESTING: checkHIPCompiler from config.setCompilers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/setCompilers.py:838)
TESTING: checkHIPPreprocessor from config.setCompilers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/setCompilers.py:874)
TESTING: checkSYCLCompiler from config.setCompilers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/setCompilers.py:895)
TESTING: checkSYCLPreprocessor from config.setCompilers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/setCompilers.py:921)
TESTING: checkCxxCompiler from config.setCompilers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/setCompilers.py:1008)
TESTING: checkCxxPreprocessor from config.setCompilers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/setCompilers.py:1049)
TESTING: checkFortranCompiler from config.setCompilers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/setCompilers.py:1148)
TESTING: checkFortranPreprocessor from config.setCompilers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/setCompilers.py:1185)
TESTING: checkFortranComments from config.setCompilers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/setCompilers.py:1207)
TESTING: checkLargeFileIO from config.setCompilers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/setCompilers.py:1342)
TESTING: checkArchiver from config.setCompilers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/setCompilers.py:1441)
TESTING: checkArchiverRecipeArgfile from config.setCompilers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/setCompilers.py:1505)
TESTING: checkSharedLinker from config.setCompilers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/setCompilers.py:1585)
TESTING: checkPIC from config.setCompilers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/setCompilers.py:1285)
TESTING: checkSharedLinkerPaths from config.setCompilers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/setCompilers.py:1697)
TESTING: checkLibC from config.setCompilers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/setCompilers.py:1736)
TESTING: checkDynamicLinker from config.setCompilers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/setCompilers.py:1782)
TESTING: output from config.setCompilers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/setCompilers.py:1831)
TESTING: checkSharedDynamicPicOptions from PETSc.options.sharedLibraries(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/PETSc/options/sharedLibraries.py:31)
TESTING: configureSharedLibraries from PETSc.options.sharedLibraries(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/PETSc/options/sharedLibraries.py:47)
TESTING: configureDynamicLibraries from PETSc.options.sharedLibraries(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/PETSc/options/sharedLibraries.py:92)
TESTING: configureSerializedFunctions from PETSc.options.sharedLibraries(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/PETSc/options/sharedLibraries.py:98)
TESTING: configureIndexSize from PETSc.options.indexTypes(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/PETSc/options/indexTypes.py:39)
TESTING: configureCompilerFlags from config.compilerFlags(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/compilerFlags.py:81)
                  =============================================================================================
                        ***** WARNING: Using default optimization C flags -g -O
                        You might consider manually setting optimal optimization flags for your system with
                         COPTFLAGS="optimization flags" see config/examples/arch-*-opt.py for examples
                  =============================================================================================
                
                  =============================================================================================
                        ***** WARNING: Using default C++ optimization flags -g -O
                        You might consider manually setting optimal optimization flags for your system with
                         CXXOPTFLAGS="optimization flags" see config/examples/arch-*-opt.py for examples
                  =============================================================================================
                
                  =============================================================================================
                        ***** WARNING: Using default FORTRAN optimization flags -g -O
                        You might consider manually setting optimal optimization flags for your system with
                         FOPTFLAGS="optimization flags" see config/examples/arch-*-opt.py for examples
                  =============================================================================================
                
                  =============================================================================================
                        ***** WARNING: Using default optimization CUDA flags -O
                        You might consider manually setting optimal optimization flags for your system with
                         CUDAOPTFLAGS="optimization flags" see config/examples/arch-*-opt.py for examples
                  =============================================================================================
                
TESTING: checkC99Flag from config.compilers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/compilers.py:1416)
TESTING: checkRestrict from config.compilers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/compilers.py:156)
TESTING: checkCFormatting from config.compilers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/compilers.py:411)
TESTING: checkCInline from config.compilers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/compilers.py:126)
TESTING: checkDynamicLoadFlag from config.compilers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/compilers.py:422)
TESTING: checkCLibraries from config.compilers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/compilers.py:220)
TESTING: checkDependencyGenerationFlag from config.compilers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/compilers.py:1367)
TESTING: checkRestrict from config.compilers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/compilers.py:156)
TESTING: checkCxxDialect from config.compilers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/compilers.py:469)
TESTING: checkCxxOptionalExtensions from config.compilers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/compilers.py:441)
TESTING: checkCxxInline from config.compilers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/compilers.py:141)
TESTING: checkCxxLibraries from config.compilers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/compilers.py:553)
TESTING: checkFortranNameMangling from config.compilers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/compilers.py:860)
TESTING: checkFortranNameManglingDouble from config.compilers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/compilers.py:898)
TESTING: checkFortranLibraries from config.compilers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/compilers.py:908)
TESTING: checkFortranLinkingCxx from config.compilers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/compilers.py:1332)
TESTING: setupFrameworkCompilers from config.compilers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/compilers.py:1490)
TESTING: configureClosure from config.utilities.closure(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/utilities/closure.py:17)
TESTING: checkFortranTypeSizes from config.compilersFortran(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/compilersFortran.py:56)
TESTING: checkFortranPreprocessor from config.compilersFortran(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/compilersFortran.py:73)
TESTING: checkFortranDefineCompilerOption from config.compilersFortran(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/compilersFortran.py:96)
TESTING: checkFortran90 from config.compilersFortran(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/compilersFortran.py:146)
TESTING: checkFortran90FreeForm from config.compilersFortran(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/compilersFortran.py:162)
TESTING: checkFortran2003 from config.compilersFortran(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/compilersFortran.py:176)
TESTING: checkFortran90Array from config.compilersFortran(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/compilersFortran.py:211)
TESTING: checkFortran90AssumedType from config.compilersFortran(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/compilersFortran.py:298)
TESTING: checkFortranModuleInclude from config.compilersFortran(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/compilersFortran.py:303)
TESTING: checkFortranModuleOutput from config.compilersFortran(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/compilersFortran.py:369)
TESTING: checkFortranTypeStar from config.compilersFortran(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/compilersFortran.py:135)
TESTING: checkFortranTypeInitialize from config.compilersFortran(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/compilersFortran.py:125)
TESTING: configureFortranFlush from config.compilersFortran(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/compilersFortran.py:116)
TESTING: checkDependencyGenerationFlag from config.compilersFortran(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/compilersFortran.py:414)
TESTING: checkStdC from config.headers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/headers.py:105)
TESTING: checkStat from config.headers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/headers.py:138)
TESTING: checkSysWait from config.headers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/headers.py:173)
TESTING: checkTime from config.headers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/headers.py:195)
TESTING: checkMath from config.headers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/headers.py:201)
TESTING: check from config.headers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/headers.py:77)
TESTING: check from config.headers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/headers.py:77)
TESTING: checkRecursiveMacros from config.headers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/headers.py:216)
TESTING: configureCacheDetails from config.utilities.cacheDetails(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/utilities/cacheDetails.py:78)
TESTING: check_struct_sigaction from config.types(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/types.py:42)
TESTING: check__int64 from config.types(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/types.py:48)
TESTING: checkSizeTypes from config.types(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/types.py:54)
TESTING: checkFileTypes from config.types(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/types.py:64)
TESTING: checkIntegerTypes from config.types(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/types.py:59)
TESTING: checkPID from config.types(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/types.py:70)
TESTING: checkUID from config.types(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/types.py:74)
TESTING: checkC99Complex from config.types(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/types.py:81)
TESTING: checkCxxComplex from config.types(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/types.py:92)
TESTING: checkConst from config.types(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/types.py:103)
TESTING: checkSizeof from config.types(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/types.py:159)
TESTING: checkSizeof from config.types(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/types.py:159)
TESTING: checkSizeof from config.types(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/types.py:159)
TESTING: checkSizeof from config.types(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/types.py:159)
TESTING: checkSizeof from config.types(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/types.py:159)
TESTING: checkSizeof from config.types(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/types.py:159)
TESTING: checkSizeof from config.types(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/types.py:159)
TESTING: checkVisibility from config.types(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/types.py:193)
TESTING: checkMaxPathLen from config.types(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/types.py:215)
TESTING: configureMemAlign from PETSc.options.memAlign(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/PETSc/options/memAlign.py:29)
TESTING: check from config.libraries(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/libraries.py:157)
TESTING: check from config.libraries(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/libraries.py:157)
TESTING: check from config.libraries(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/libraries.py:157)
TESTING: check from config.libraries(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/libraries.py:157)
TESTING: checkMath from config.libraries(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/libraries.py:264)
TESTING: checkMathErf from config.libraries(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/libraries.py:283)
TESTING: checkMathTgamma from config.libraries(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/libraries.py:292)
TESTING: checkMathLgamma from config.libraries(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/libraries.py:301)
TESTING: checkMathFenv from config.libraries(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/libraries.py:314)
TESTING: checkMathLog2 from config.libraries(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/libraries.py:322)
TESTING: checkRealtime from config.libraries(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/libraries.py:331)
TESTING: checkDynamic from config.libraries(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/libraries.py:347)
TESTING: configureLibraryOptions from PETSc.options.libraryOptions(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/PETSc/options/libraryOptions.py:37)
TESTING: configureISColorValueType from PETSc.options.libraryOptions(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/PETSc/options/libraryOptions.py:95)
TESTING: checkSysinfo from config.functions(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/functions.py:106)
TESTING: checkVPrintf from config.functions(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/functions.py:125)
TESTING: checkVFPrintf from config.functions(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/functions.py:131)
TESTING: checkVSNPrintf from config.functions(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/functions.py:137)
TESTING: checkNanosleep from config.functions(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/functions.py:167)
TESTING: checkMemmove from config.functions(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/functions.py:173)
TESTING: checkSignalHandlerType from config.functions(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/functions.py:143)
TESTING: checkFreeReturnType from config.functions(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/functions.py:153)
TESTING: checkVariableArgumentLists from config.functions(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/functions.py:159)
TESTING: checkClassify from config.functions(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/functions.py:85)
TESTING: checkMmap from config.functions(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/functions.py:179)
TESTING: configureMemorySize from config.utilities.getResidentSetSize(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/utilities/getResidentSetSize.py:31)
TESTING: configureFortranCommandLine from config.utilities.fortranCommandLine(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/utilities/fortranCommandLine.py:27)
TESTING: configureFeatureTestMacros from config.utilities.featureTestMacros(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/utilities/featureTestMacros.py:13)
TESTING: configureMissingUtypeTypedefs from config.utilities.missing(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/utilities/missing.py:55)
TESTING: configureMissingFunctions from config.utilities.missing(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/utilities/missing.py:61)
TESTING: configureMissingSignals from config.utilities.missing(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/utilities/missing.py:79)
TESTING: configureMissingGetdomainnamePrototype from config.utilities.missing(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/utilities/missing.py:96)
TESTING: configureMissingSrandPrototype from config.utilities.missing(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/utilities/missing.py:121)
TESTING: configureFPTrap from config.utilities.FPTrap(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/utilities/FPTrap.py:27)
TESTING: configureScalarType from PETSc.options.scalarTypes(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/PETSc/options/scalarTypes.py:40)
TESTING: configurePrecision from PETSc.options.scalarTypes(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/PETSc/options/scalarTypes.py:81)
TESTING: configureMkdir from config.programs(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/programs.py:22)
TESTING: configureAutoreconf from config.programs(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/programs.py:44)
TESTING: configurePrograms from config.programs(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/programs.py:71)
TESTING: consistencyChecks from config.packages.make(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:963)
TESTING: alternateConfigureLibrary from config.packages.make(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:959)
TESTING: configureMake from config.packages.make(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/packages/make.py:96)
              =============================================================================================
                    ***** WARNING: You have a version of GNU make older than 4.0. It will work,
                    but may not support all the parallel testing options. You can install the 
                    latest GNU make with your package manager, such as brew or macports, or use
                    the --download-make option to get the latest GNU make *****
              =============================================================================================
            
TESTING: setupGNUMake from config.packages.make(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/packages/make.py:150)
TESTING: configureMakeNP from config.packages.make(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/packages/make.py:197)
TESTING: consistencyChecks from config.packages.X(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:963)
TESTING: checkDependencies from config.packages.X(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:872)
TESTING: configureLibrary from config.packages.X(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:897)
TESTING: check from config.libraries(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/libraries.py:157)
TESTING: check from config.libraries(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/libraries.py:157)
TESTING: checkInclude from config.headers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/headers.py:86)
TESTING: checkInclude from config.headers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/headers.py:86)
TESTING: checkVersion from config.packages.X(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:1026)
TESTING: checkSharedLibrary from config.packages.X(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:955)
TESTING: consistencyChecks from config.packages.hwloc(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:963)
TESTING: checkDependencies from config.packages.hwloc(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:872)
TESTING: configureLibrary from config.packages.hwloc(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:897)
                        =============================================================================================
                              Trying to download http://www.open-mpi.org/software/hwloc/v2.4/downloads/hwloc-2.4.0.tar.gz for HWLOC
                        =============================================================================================
                      
                        =============================================================================================
                              Running configure on HWLOC; this may take several minutes
                        =============================================================================================
                      
                        =============================================================================================
                              Running make on HWLOC; this may take several minutes
                        =============================================================================================
                      
                        =============================================================================================
                              Running make install on HWLOC; this may take several minutes
                        =============================================================================================
                      
TESTING: check from config.libraries(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/libraries.py:157)
TESTING: checkInclude from config.headers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/headers.py:86)
TESTING: checkInclude from config.headers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/headers.py:86)
TESTING: checkVersion from config.packages.hwloc(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:1026)
TESTING: checkSharedLibrary from config.packages.hwloc(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:955)
TESTING: consistencyChecks from config.packages.valgrind(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:963)
TESTING: configureLibrary from config.packages.valgrind(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:897)
TESTING: check from config.libraries(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/libraries.py:157)
TESTING: checkInclude from config.headers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/headers.py:86)
TESTING: checkInclude from config.headers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/headers.py:86)
TESTING: check from config.libraries(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/libraries.py:157)
TESTING: checkInclude from config.headers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/headers.py:86)
TESTING: checkInclude from config.headers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/headers.py:86)
TESTING: check from config.libraries(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/libraries.py:157)
TESTING: checkInclude from config.headers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/headers.py:86)
TESTING: checkInclude from config.headers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/headers.py:86)
          =============================================================================================
                It appears you do not have valgrind installed on your system.
                We HIGHLY recommend you install it from www.valgrind.org
                Or install valgrind-devel or equivalent using your package manager.
                Then rerun ./configure
          =============================================================================================
        
TESTING: consistencyChecks from config.packages.thrust(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:963)
TESTING: alternateConfigureLibrary from config.packages.thrust(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:959)
TESTING: consistencyChecks from config.packages.cuda(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:963)
TESTING: alternateConfigureLibrary from config.packages.cuda(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:959)
TESTING: consistencyChecks from config.packages.OpenMPI(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:963)
TESTING: alternateConfigureLibrary from config.packages.OpenMPI(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:959)
TESTING: consistencyChecks from config.packages.MPICH(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:963)
TESTING: checkDependencies from config.packages.MPICH(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:872)
TESTING: configureLibrary from config.packages.MPICH(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:897)
                        =============================================================================================
                              Trying to download http://ftp.mcs.anl.gov/pub/petsc/externalpackages/mpich-3.4.1-petsc1.tar.gz for MPICH
                        =============================================================================================
                      
                          =============================================================================================
                                Running configure on MPICH; this may take several minutes
                          =============================================================================================
                        
                          =============================================================================================
                                Running make on MPICH; this may take several minutes
                          =============================================================================================
                        
                          =============================================================================================
                                Running make install on MPICH; this may take several minutes
                          =============================================================================================
                        
TESTING: resetEnvCompilers from config.setCompilers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/setCompilers.py:1932)
TESTING: checkEnvCompilers from config.setCompilers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/setCompilers.py:1962)
TESTING: checkMPICompilerOverride from config.setCompilers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/setCompilers.py:1902)
TESTING: requireMpiLdPath from config.setCompilers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/setCompilers.py:1923)
TESTING: checkInitialFlags from config.setCompilers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/setCompilers.py:514)
TESTING: checkCCompiler from config.setCompilers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/setCompilers.py:689)
TESTING: checkCPreprocessor from config.setCompilers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/setCompilers.py:728)
TESTING: checkCUDACompiler from config.setCompilers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/setCompilers.py:764)
TESTING: checkCUDAPreprocessor from config.setCompilers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/setCompilers.py:804)
TESTING: checkHIPCompiler from config.setCompilers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/setCompilers.py:838)
TESTING: checkHIPPreprocessor from config.setCompilers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/setCompilers.py:874)
TESTING: checkSYCLCompiler from config.setCompilers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/setCompilers.py:895)
TESTING: checkSYCLPreprocessor from config.setCompilers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/setCompilers.py:921)
TESTING: checkCxxCompiler from config.setCompilers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/setCompilers.py:1008)
TESTING: checkCxxPreprocessor from config.setCompilers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/setCompilers.py:1049)
TESTING: checkFortranCompiler from config.setCompilers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/setCompilers.py:1148)
TESTING: checkFortranPreprocessor from config.setCompilers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/setCompilers.py:1185)
TESTING: checkFortranComments from config.setCompilers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/setCompilers.py:1207)
TESTING: checkLargeFileIO from config.setCompilers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/setCompilers.py:1342)
TESTING: checkArchiver from config.setCompilers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/setCompilers.py:1441)
TESTING: checkArchiverRecipeArgfile from config.setCompilers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/setCompilers.py:1505)
TESTING: checkSharedLinker from config.setCompilers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/setCompilers.py:1585)
TESTING: checkPIC from config.setCompilers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/setCompilers.py:1285)
TESTING: checkSharedLinkerPaths from config.setCompilers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/setCompilers.py:1697)
TESTING: checkLibC from config.setCompilers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/setCompilers.py:1736)
TESTING: checkDynamicLinker from config.setCompilers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/setCompilers.py:1782)
TESTING: output from config.setCompilers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/setCompilers.py:1831)
TESTING: configureCompilerFlags from config.compilerFlags(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/compilerFlags.py:81)
                                    =============================================================================================
                                          ***** WARNING: Using default optimization C flags -g -O
                                          You might consider manually setting optimal optimization flags for your system with
                                           COPTFLAGS="optimization flags" see config/examples/arch-*-opt.py for examples
                                    =============================================================================================
                                  
                                    =============================================================================================
                                          ***** WARNING: Using default C++ optimization flags -g -O
                                          You might consider manually setting optimal optimization flags for your system with
                                           CXXOPTFLAGS="optimization flags" see config/examples/arch-*-opt.py for examples
                                    =============================================================================================
                                  
                                    =============================================================================================
                                          ***** WARNING: Using default FORTRAN optimization flags -g -O
                                          You might consider manually setting optimal optimization flags for your system with
                                           FOPTFLAGS="optimization flags" see config/examples/arch-*-opt.py for examples
                                    =============================================================================================
                                  
                                    =============================================================================================
                                          ***** WARNING: Using default optimization CUDA flags -O
                                          You might consider manually setting optimal optimization flags for your system with
                                           CUDAOPTFLAGS="optimization flags" see config/examples/arch-*-opt.py for examples
                                    =============================================================================================
                                  
TESTING: checkC99Flag from config.compilers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/compilers.py:1416)
TESTING: checkRestrict from config.compilers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/compilers.py:156)
TESTING: checkCFormatting from config.compilers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/compilers.py:411)
TESTING: checkCInline from config.compilers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/compilers.py:126)
TESTING: checkDynamicLoadFlag from config.compilers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/compilers.py:422)
TESTING: checkCLibraries from config.compilers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/compilers.py:220)
TESTING: checkDependencyGenerationFlag from config.compilers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/compilers.py:1367)
TESTING: checkRestrict from config.compilers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/compilers.py:156)
TESTING: checkCxxDialect from config.compilers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/compilers.py:469)
TESTING: checkCxxOptionalExtensions from config.compilers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/compilers.py:441)
TESTING: checkCxxInline from config.compilers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/compilers.py:141)
TESTING: checkCxxLibraries from config.compilers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/compilers.py:553)
TESTING: checkFortranNameMangling from config.compilers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/compilers.py:860)
TESTING: checkFortranNameManglingDouble from config.compilers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/compilers.py:898)
TESTING: checkFortranLibraries from config.compilers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/compilers.py:908)
TESTING: checkFortranLinkingCxx from config.compilers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/compilers.py:1332)
TESTING: setupFrameworkCompilers from config.compilers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/compilers.py:1490)
TESTING: check from config.libraries(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/libraries.py:157)
TESTING: checkInclude from config.headers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/headers.py:86)
TESTING: checkVersion from config.packages.MPICH(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:1026)
TESTING: checkSharedLibrary from config.packages.MPICH(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:955)
TESTING: consistencyChecks from config.packages.MPI(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:963)
TESTING: checkDependencies from config.packages.MPI(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:872)
TESTING: configureLibrary from config.packages.MPI(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/packages/MPI.py:705)
TESTING: check from config.libraries(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/libraries.py:157)
TESTING: checkInclude from config.headers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/headers.py:86)
TESTING: checkInclude from config.headers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/headers.py:86)
TESTING: checkMPIDistro from config.packages.MPI(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/packages/MPI.py:558)
TESTING: configureMPI2 from config.packages.MPI(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/packages/MPI.py:331)
TESTING: configureMPI3 from config.packages.MPI(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/packages/MPI.py:378)
TESTING: configureMPIEXEC from config.packages.MPI(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/packages/MPI.py:176)
TESTING: configureMPITypes from config.packages.MPI(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/packages/MPI.py:425)
TESTING: SGIMPICheck from config.packages.MPI(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/packages/MPI.py:486)
TESTING: CxxMPICheck from config.packages.MPI(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/packages/MPI.py:496)
TESTING: FortranMPICheck from config.packages.MPI(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/packages/MPI.py:512)
TESTING: configureIO from config.packages.MPI(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/packages/MPI.py:534)
TESTING: findMPIInc from config.packages.MPI(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/packages/MPI.py:638)
TESTING: PetscArchMPICheck from config.packages.MPI(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/packages/MPI.py:680)
TESTING: checkVersion from config.packages.MPI(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:1026)
TESTING: checkSharedLibrary from config.packages.MPI(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:955)
TESTING: consistencyChecks from config.packages.zstd(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:963)
TESTING: alternateConfigureLibrary from config.packages.zstd(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:959)
TESTING: consistencyChecks from config.packages.yaml(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:963)
TESTING: alternateConfigureLibrary from config.packages.yaml(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:959)
TESTING: consistencyChecks from config.packages.sycl(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:963)
TESTING: alternateConfigureLibrary from config.packages.sycl(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:959)
TESTING: consistencyChecks from config.packages.ssl(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/packages/ssl.py:31)
TESTING: alternateConfigureLibrary from config.packages.ssl(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:959)
TESTING: consistencyChecks from config.packages.sprng(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:963)
TESTING: alternateConfigureLibrary from config.packages.sprng(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:959)
TESTING: consistencyChecks from config.packages.revolve(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:963)
TESTING: alternateConfigureLibrary from config.packages.revolve(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:959)
TESTING: consistencyChecks from config.packages.radau5(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:963)
TESTING: alternateConfigureLibrary from config.packages.radau5(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:959)
TESTING: consistencyChecks from config.packages.pami(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:963)
TESTING: alternateConfigureLibrary from config.packages.pami(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:959)
TESTING: consistencyChecks from config.packages.opengles(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:963)
TESTING: alternateConfigureLibrary from config.packages.opengles(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:959)
TESTING: consistencyChecks from config.packages.opencl(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:963)
TESTING: alternateConfigureLibrary from config.packages.opencl(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:959)
TESTING: consistencyChecks from config.packages.muparser(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:963)
TESTING: alternateConfigureLibrary from config.packages.muparser(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:959)
TESTING: consistencyChecks from config.packages.mpe(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:963)
TESTING: alternateConfigureLibrary from config.packages.mpe(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:959)
TESTING: consistencyChecks from config.packages.memkind(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:963)
TESTING: alternateConfigureLibrary from config.packages.memkind(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:959)
TESTING: consistencyChecks from config.packages.libmesh(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:963)
TESTING: alternateConfigureLibrary from config.packages.libmesh(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/packages/libmesh.py:76)
TESTING: consistencyChecks from config.packages.moose(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:963)
TESTING: alternateConfigureLibrary from config.packages.moose(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:959)
TESTING: consistencyChecks from config.packages.libjpeg(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:963)
TESTING: alternateConfigureLibrary from config.packages.libjpeg(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:959)
TESTING: consistencyChecks from config.packages.hip(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:963)
TESTING: alternateConfigureLibrary from config.packages.hip(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:959)
TESTING: consistencyChecks from config.packages.gmp(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:963)
TESTING: alternateConfigureLibrary from config.packages.gmp(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:959)
TESTING: consistencyChecks from config.packages.mpfr(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:963)
TESTING: alternateConfigureLibrary from config.packages.mpfr(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:959)
TESTING: consistencyChecks from config.packages.giflib(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:963)
TESTING: alternateConfigureLibrary from config.packages.giflib(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:959)
TESTING: consistencyChecks from config.packages.cub(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:963)
TESTING: alternateConfigureLibrary from config.packages.cub(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:959)
TESTING: consistencyChecks from config.packages.ctetgen(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:963)
TESTING: alternateConfigureLibrary from config.packages.ctetgen(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:959)
TESTING: consistencyChecks from config.packages.concurrencykit(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:963)
TESTING: alternateConfigureLibrary from config.packages.concurrencykit(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:959)
TESTING: consistencyChecks from config.packages.boost(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:963)
TESTING: alternateConfigureLibrary from config.packages.boost(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:959)
TESTING: consistencyChecks from config.packages.silo(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:963)
TESTING: alternateConfigureLibrary from config.packages.silo(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:959)
TESTING: consistencyChecks from config.packages.Random123(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:963)
TESTING: alternateConfigureLibrary from config.packages.Random123(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:959)
TESTING: consistencyChecks from config.packages.PARTY(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:963)
TESTING: alternateConfigureLibrary from config.packages.PARTY(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:959)
TESTING: consistencyChecks from config.packages.Matlab(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:963)
TESTING: alternateConfigureLibrary from config.packages.Matlab(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:959)
TESTING: consistencyChecks from config.packages.MatlabEngine(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:963)
TESTING: alternateConfigureLibrary from config.packages.MatlabEngine(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:959)
TESTING: consistencyChecks from config.packages.Mathematica(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:963)
TESTING: alternateConfigureLibrary from config.packages.Mathematica(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:959)
TESTING: consistencyChecks from config.packages.regex(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:963)
TESTING: checkDependencies from config.packages.regex(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:872)
TESTING: configureLibrary from config.packages.regex(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:897)
TESTING: check from config.libraries(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/libraries.py:157)
TESTING: checkInclude from config.headers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/headers.py:86)
TESTING: checkInclude from config.headers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/headers.py:86)
TESTING: checkVersion from config.packages.regex(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:1026)
TESTING: checkSharedLibrary from config.packages.regex(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:955)
TESTING: consistencyChecks from config.packages.libceed(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:963)
TESTING: alternateConfigureLibrary from config.packages.libceed(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:959)
TESTING: consistencyChecks from config.packages.petsc4py(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:963)
TESTING: alternateConfigureLibrary from config.packages.petsc4py(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/packages/petsc4py.py:118)
TESTING: consistencyChecks from config.packages.mpi4py(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:963)
TESTING: alternateConfigureLibrary from config.packages.mpi4py(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/packages/mpi4py.py:74)
TESTING: consistencyChecks from config.packages.slepc(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:963)
TESTING: alternateConfigureLibrary from config.packages.slepc(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/packages/slepc.py:97)
TESTING: consistencyChecks from config.packages.opengl(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:963)
TESTING: alternateConfigureLibrary from config.packages.opengl(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:959)
TESTING: consistencyChecks from config.packages.glut(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:963)
TESTING: alternateConfigureLibrary from config.packages.glut(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:959)
TESTING: consistencyChecks from config.packages.GLVis(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:963)
TESTING: alternateConfigureLibrary from config.packages.GLVis(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:959)
TESTING: consistencyChecks from config.packages.CoDiPack(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:963)
TESTING: alternateConfigureLibrary from config.packages.CoDiPack(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:959)
TESTING: consistencyChecks from config.packages.adblaslapack(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:963)
TESTING: alternateConfigureLibrary from config.packages.adblaslapack(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:959)
TESTING: locateCMake from config.packages.cmake(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/packages/cmake.py:48)
TESTING: consistencyChecks from config.packages.unittestcpp(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:963)
TESTING: alternateConfigureLibrary from config.packages.unittestcpp(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:959)
TESTING: consistencyChecks from config.packages.googletest(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:963)
TESTING: alternateConfigureLibrary from config.packages.googletest(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:959)
TESTING: consistencyChecks from config.packages.eigen(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:963)
TESTING: checkDependencies from config.packages.eigen(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:872)
TESTING: configureLibrary from config.packages.eigen(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:897)
                      =============================================================================================
                            Trying to download /util/academic/firedrake/20210310-basic/firedrake/src/eigen-3.3.3.tgz for EIGEN
                      =============================================================================================
                    
                      =============================================================================================
                            Configuring EIGEN with cmake; this may take several minutes
                      =============================================================================================
                    
                      =============================================================================================
                            Compiling and installing EIGEN; this may take several minutes
                      =============================================================================================
                    
TESTING: check from config.libraries(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/libraries.py:157)
TESTING: checkInclude from config.headers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/headers.py:86)
TESTING: checkInclude from config.headers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/headers.py:86)
TESTING: checkVersion from config.packages.eigen(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:1026)
TESTING: checkSharedLibrary from config.packages.eigen(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:955)
TESTING: consistencyChecks from config.packages.szlib(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:963)
TESTING: alternateConfigureLibrary from config.packages.szlib(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:959)
TESTING: consistencyChecks from config.packages.zlib(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:963)
TESTING: checkDependencies from config.packages.zlib(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:872)
TESTING: configureLibrary from config.packages.zlib(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:897)
TESTING: check from config.libraries(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/libraries.py:157)
TESTING: check from config.libraries(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/libraries.py:157)
TESTING: checkInclude from config.headers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/headers.py:86)
TESTING: checkInclude from config.headers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/headers.py:86)
TESTING: checkVersion from config.packages.zlib(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:1026)
TESTING: checkSharedLibrary from config.packages.zlib(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:955)
TESTING: consistencyChecks from config.packages.tetgen(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:963)
TESTING: alternateConfigureLibrary from config.packages.tetgen(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:959)
TESTING: consistencyChecks from config.packages.tchem(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:963)
TESTING: alternateConfigureLibrary from config.packages.tchem(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:959)
TESTING: consistencyChecks from config.packages.saws(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:963)
TESTING: alternateConfigureLibrary from config.packages.saws(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:959)
TESTING: consistencyChecks from config.packages.libpng(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:963)
TESTING: alternateConfigureLibrary from config.packages.libpng(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:959)
TESTING: consistencyChecks from config.packages.combblas(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:963)
TESTING: alternateConfigureLibrary from config.packages.combblas(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:959)
TESTING: consistencyChecks from config.packages.Triangle(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:963)
TESTING: alternateConfigureLibrary from config.packages.Triangle(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:959)
TESTING: consistencyChecks from config.packages.metis(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:963)
TESTING: checkDependencies from config.packages.metis(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:872)
TESTING: configureLibrary from config.packages.metis(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/packages/metis.py:46)
                        =============================================================================================
                              Trying to download git://https://bitbucket.org/petsc/pkg-metis.git for METIS
                        =============================================================================================
                      
                        =============================================================================================
                              Configuring METIS with cmake; this may take several minutes
                        =============================================================================================
                      
                        =============================================================================================
                              Compiling and installing METIS; this may take several minutes
                        =============================================================================================
                      
TESTING: check from config.libraries(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/libraries.py:157)
TESTING: checkInclude from config.headers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/headers.py:86)
TESTING: checkInclude from config.headers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/headers.py:86)
TESTING: checkVersion from config.packages.metis(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:1026)
TESTING: checkSharedLibrary from config.packages.metis(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:955)
TESTING: consistencyChecks from config.packages.pragmatic(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:963)
TESTING: alternateConfigureLibrary from config.packages.pragmatic(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:959)
TESTING: consistencyChecks from config.packages.parmetis(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:963)
TESTING: alternateConfigureLibrary from config.packages.parmetis(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:959)
TESTING: consistencyChecks from config.packages.Chaco(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:963)
TESTING: checkDependencies from config.packages.Chaco(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:872)
TESTING: configureLibrary from config.packages.Chaco(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/packages/Chaco.py:57)
                **************************************************************************************************
                Please register to use Chaco at http://www.cs.sandia.gov/web1400/1400_download.html
                **************************************************************************************************

                        =============================================================================================
                              Trying to download git://https://bitbucket.org/petsc/pkg-chaco.git for CHACO
                        =============================================================================================
                      
                        =============================================================================================
                              Compiling and installing chaco; this may take several minutes
                        =============================================================================================
                      
TESTING: check from config.libraries(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/libraries.py:157)
TESTING: checkInclude from config.headers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/headers.py:86)
TESTING: checkVersion from config.packages.Chaco(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:1026)
TESTING: checkSharedLibrary from config.packages.Chaco(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:955)
TESTING: consistencyChecks from config.packages.hdf5(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:963)
TESTING: checkDependencies from config.packages.hdf5(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:872)
TESTING: configureLibrary from config.packages.hdf5(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/packages/hdf5.py:83)
                        =============================================================================================
                              Trying to download https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.12/hdf5-1.12.0/src/hdf5-1.12.0.tar.bz2 for HDF5
                        =============================================================================================
                      
                        =============================================================================================
                              Running configure on HDF5; this may take several minutes
                        =============================================================================================
                      
                        =============================================================================================
                              Running make on HDF5; this may take several minutes
                        =============================================================================================
                      
                        =============================================================================================
                              Running make install on HDF5; this may take several minutes
                        =============================================================================================
                      
TESTING: check from config.libraries(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/libraries.py:157)
TESTING: checkInclude from config.headers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/headers.py:86)
TESTING: checkInclude from config.headers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/headers.py:86)
TESTING: checkVersion from config.packages.hdf5(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:1026)
TESTING: checkSharedLibrary from config.packages.hdf5(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:955)
TESTING: consistencyChecks from config.packages.med(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:963)
TESTING: alternateConfigureLibrary from config.packages.med(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:959)
TESTING: consistencyChecks from config.packages.cgns(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:963)
TESTING: alternateConfigureLibrary from config.packages.cgns(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:959)
TESTING: consistencyChecks from config.packages.ascem-io(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:963)
TESTING: alternateConfigureLibrary from config.packages.ascem-io(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:959)
TESTING: consistencyChecks from config.packages.pflotran(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:963)
TESTING: alternateConfigureLibrary from config.packages.pflotran(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:959)
TESTING: consistencyChecks from config.packages.alquimia(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:963)
TESTING: alternateConfigureLibrary from config.packages.alquimia(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:959)
TESTING: consistencyChecks from config.packages.SAMRAI(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:963)
TESTING: alternateConfigureLibrary from config.packages.SAMRAI(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:959)
TESTING: consistencyChecks from config.packages.ADIOS2(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:963)
TESTING: alternateConfigureLibrary from config.packages.ADIOS2(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:959)
TESTING: consistencyChecks from config.packages.pnetcdf(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:963)
TESTING: checkDependencies from config.packages.pnetcdf(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:872)
TESTING: configureLibrary from config.packages.pnetcdf(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:897)
                      =============================================================================================
                            Trying to download git://https://github.com/parallel-netcdf/pnetcdf for PNETCDF
                      =============================================================================================
                    
                        =============================================================================================
                              Running libtoolize on PNETCDF; this may take several minutes
                        =============================================================================================
                      
                        =============================================================================================
                              Running autoreconf on PNETCDF; this may take several minutes
                        =============================================================================================
                      
                      =============================================================================================
                            Running configure on PNETCDF; this may take several minutes
                      =============================================================================================
                    
                      =============================================================================================
                            Running make on PNETCDF; this may take several minutes
                      =============================================================================================
                    
                      =============================================================================================
                            Running make install on PNETCDF; this may take several minutes
                      =============================================================================================
                    
TESTING: check from config.libraries(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/libraries.py:157)
TESTING: checkInclude from config.headers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/headers.py:86)
TESTING: checkInclude from config.headers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/headers.py:86)
TESTING: checkVersion from config.packages.pnetcdf(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:1026)
TESTING: checkSharedLibrary from config.packages.pnetcdf(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:955)
TESTING: consistencyChecks from config.packages.netcdf(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:963)
TESTING: checkDependencies from config.packages.netcdf(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:872)
TESTING: configureLibrary from config.packages.netcdf(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:897)
                      =============================================================================================
                            Trying to download https://github.com/Unidata/netcdf-c/archive/v4.5.0.tar.gz for NETCDF
                      =============================================================================================
                    
                      =============================================================================================
                            Running configure on NETCDF; this may take several minutes
                      =============================================================================================
                    
                      =============================================================================================
                            Running make on NETCDF; this may take several minutes
                      =============================================================================================
                    
                      =============================================================================================
                            Running make install on NETCDF; this may take several minutes
                      =============================================================================================
                    
TESTING: check from config.libraries(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/libraries.py:157)
TESTING: checkInclude from config.headers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/headers.py:86)
TESTING: checkInclude from config.headers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/headers.py:86)
TESTING: checkVersion from config.packages.netcdf(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:1026)
TESTING: checkSharedLibrary from config.packages.netcdf(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:955)
TESTING: consistencyChecks from config.packages.exodusii(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:963)
TESTING: alternateConfigureLibrary from config.packages.exodusii(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:959)
TESTING: consistencyChecks from config.packages.fblaslapack(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:963)
TESTING: alternateConfigureLibrary from config.packages.fblaslapack(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/packages/fblaslapack.py:27)
TESTING: consistencyChecks from config.packages.pthread(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:963)
TESTING: checkDependencies from config.packages.pthread(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:872)
TESTING: configureLibrary from config.packages.pthread(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/packages/pthread.py:20)
TESTING: check from config.libraries(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/libraries.py:157)
TESTING: check from config.libraries(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/libraries.py:157)
TESTING: checkInclude from config.headers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/headers.py:86)
TESTING: checkInclude from config.headers(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/headers.py:86)
TESTING: checkVersion from config.packages.pthread(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:1026)
TESTING: checkSharedLibrary from config.packages.pthread(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:955)
TESTING: consistencyChecks from config.packages.egads(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:963)
TESTING: alternateConfigureLibrary from config.packages.egads(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:959)
TESTING: consistencyChecks from config.packages.PTScotch(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:963)
TESTING: checkDependencies from config.packages.PTScotch(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:872)
TESTING: configureLibrary from config.packages.PTScotch(/util/academic/firedrake/20210310-basic/firedrake/src/petsc/config/BuildSystem/config/package.py:897)
                      =============================================================================================
                            Trying to download git://https://gitlab.inria.fr/scotch/scotch.git for PTSCOTCH
                      =============================================================================================
                    
                      =============================================================================================
                            Compiling PTScotch; this may take several minutes
                      =============================================================================================
                    
*******************************************************************************
         UNABLE to CONFIGURE with GIVEN OPTIONS    (see configure.log for details):
-------------------------------------------------------------------------------
Error running make on PTScotch: Could not execute "['cd /util/academic/firedrake/20210310-basic/firedrake/src/petsc/default/externalpackages/git.ptscotch/src && make clean ptesmumps esmumps']":
/usr/bin/mkdir -p ../bin
/usr/bin/mkdir -p ../include
/usr/bin/mkdir -p ../lib
(cd libscotch ;      make clean)
make[1]: Entering directory `/util/academic/firedrake/20210310-basic/firedrake/src/petsc/default/externalpackages/git.ptscotch/src/libscotch'
rm -f *~ *.o lib*.a parser_yy.c parser_ly.h parser_ll.c *scotch.h *scotchf.h y.output *dummysizes
make[1]: Leaving directory `/util/academic/firedrake/20210310-basic/firedrake/src/petsc/default/externalpackages/git.ptscotch/src/libscotch'
(cd scotch ;         make clean)
make[1]: Entering directory `/util/academic/firedrake/20210310-basic/firedrake/src/petsc/default/externalpackages/git.ptscotch/src/scotch'
rm -f *~ *.o acpl amk_ccc amk_fft2 amk_grf amk_hy amk_m2 amk_p2 atst gbase gcv gdump *ggath *gmap gmk_hy gmk_m2 gmk_m3 gmk_msh gmk_ub2 gmtst *gord gotst gout *gpart *gscat *gtst mcv mmk_m2 mmk_m3 mord mtst
make[1]: Leaving directory `/util/academic/firedrake/20210310-basic/firedrake/src/petsc/default/externalpackages/git.ptscotch/src/scotch'
(cd libscotchmetis ; make clean)
make[1]: Entering directory `/util/academic/firedrake/20210310-basic/firedrake/src/petsc/default/externalpackages/git.ptscotch/src/libscotchmetis'
rm -f *~ *.o lib*.a metis.h parmetis.h
make[1]: Leaving directory `/util/academic/firedrake/20210310-basic/firedrake/src/petsc/default/externalpackages/git.ptscotch/src/libscotchmetis'
(cd check ;          make clean)
make[1]: Entering directory `/util/academic/firedrake/20210310-basic/firedrake/src/petsc/default/externalpackages/git.ptscotch/src/check'
rm -f *~ *.o
make[1]: Leaving directory `/util/academic/firedrake/20210310-basic/firedrake/src/petsc/default/externalpackages/git.ptscotch/src/check'
(cd esmumps ;        make clean)
make[1]: Entering directory `/util/academic/firedrake/20210310-basic/firedrake/src/petsc/default/externalpackages/git.ptscotch/src/esmumps'
rm -f *~ common.h *.o lib*.a main_esmumps
make[1]: Leaving directory `/util/academic/firedrake/20210310-basic/firedrake/src/petsc/default/externalpackages/git.ptscotch/src/esmumps'
(cd libscotch ;      make VERSION=6 RELEASE=1 PATCHLEVEL=0 scotch && make install)
make[1]: Entering directory `/util/academic/firedrake/20210310-basic/firedrake/src/petsc/default/externalpackages/git.ptscotch/src/libscotch'
make 					\
				CC="/util/academic/firedrake/20210310-basic/firedrake/src/petsc/default/bin/mpicc"					\
				CCD="/util/academic/firedrake/20210310-basic/firedrake/src/petsc/default/bin/mpicc"					\
				scotch.h					\
				scotchf.h					\
				libscotch.a					\
				libscotcherr.a				\
				libscotcherrexit.a
make[2]: Entering directory `/util/academic/firedrake/20210310-basic/firedrake/src/petsc/default/externalpackages/git.ptscotch/src/libscotch'
/util/academic/firedrake/20210310-basic/firedrake/src/petsc/default/bin/mpicc -fstack-protector -g -O -I/util/academic/firedrake/20210310-basic/firedrake/src/petsc/default/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DINTSIZE32 -DSCOTCH_METIS_PREFIX  -c arch.c -o arch.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=0
/util/academic/firedrake/20210310-basic/firedrake/src/petsc/default/bin/mpicc -fstack-protector -g -O -I/util/academic/firedrake/20210310-basic/firedrake/src/petsc/default/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DINTSIZE32 -DSCOTCH_METIS_PREFIX -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=0 dummysizes.c -o dummysizes -lz -lpthread -lm -lrt
./dummysizes "-s" library.h scotch.h
./dummysizes "-s" library_f.h scotchf.h
/util/academic/firedrake/20210310-basic/firedrake/src/petsc/default/bin/mpicc -fstack-protector -g -O -I/util/academic/firedrake/20210310-basic/firedrake/src/petsc/default/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DINTSIZE32 -DSCOTCH_METIS_PREFIX  -c arch_build.c -o arch_build.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=0
/util/academic/firedrake/20210310-basic/firedrake/src/petsc/default/bin/mpicc -fstack-protector -g -O -I/util/academic/firedrake/20210310-basic/firedrake/src/petsc/default/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DINTSIZE32 -DSCOTCH_METIS_PREFIX  -c arch_build2.c -o arch_build2.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=0
/util/academic/firedrake/20210310-basic/firedrake/src/petsc/default/bin/mpicc -fstack-protector -g -O -I/util/academic/firedrake/20210310-basic/firedrake/src/petsc/default/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DINTSIZE32 -DSCOTCH_METIS_PREFIX  -c arch_cmplt.c -o arch_cmplt.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=0
/util/academic/firedrake/20210310-basic/firedrake/src/petsc/default/bin/mpicc -fstack-protector -g -O -I/util/academic/firedrake/20210310-basic/firedrake/src/petsc/default/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DINTSIZE32 -DSCOTCH_METIS_PREFIX  -c arch_cmpltw.c -o arch_cmpltw.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=0
/util/academic/firedrake/20210310-basic/firedrake/src/petsc/default/bin/mpicc -fstack-protector -g -O -I/util/academic/firedrake/20210310-basic/firedrake/src/petsc/default/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DINTSIZE32 -DSCOTCH_METIS_PREFIX  -c arch_deco.c -o arch_deco.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=0
/util/academic/firedrake/20210310-basic/firedrake/src/petsc/default/bin/mpicc -fstack-protector -g -O -I/util/academic/firedrake/20210310-basic/firedrake/src/petsc/default/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DINTSIZE32 -DSCOTCH_METIS_PREFIX  -c arch_deco2.c -o arch_deco2.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=0
/util/academic/firedrake/20210310-basic/firedrake/src/petsc/default/bin/mpicc -fstack-protector -g -O -I/util/academic/firedrake/20210310-basic/firedrake/src/petsc/default/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DINTSIZE32 -DSCOTCH_METIS_PREFIX  -c arch_dist.c -o arch_dist.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=0
/util/academic/firedrake/20210310-basic/firedrake/src/petsc/default/bin/mpicc -fstack-protector -g -O -I/util/academic/firedrake/20210310-basic/firedrake/src/petsc/default/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DINTSIZE32 -DSCOTCH_METIS_PREFIX  -c arch_hcub.c -o arch_hcub.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=0
/util/academic/firedrake/20210310-basic/firedrake/src/petsc/default/bin/mpicc -fstack-protector -g -O -I/util/academic/firedrake/20210310-basic/firedrake/src/petsc/default/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DINTSIZE32 -DSCOTCH_METIS_PREFIX  -c arch_mesh.c -o arch_mesh.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=0
/util/academic/firedrake/20210310-basic/firedrake/src/petsc/default/bin/mpicc -fstack-protector -g -O -I/util/academic/firedrake/20210310-basic/firedrake/src/petsc/default/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DINTSIZE32 -DSCOTCH_METIS_PREFIX  -c arch_sub.c -o arch_sub.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=0
/util/academic/firedrake/20210310-basic/firedrake/src/petsc/default/bin/mpicc -fstack-protector -g -O -I/util/academic/firedrake/20210310-basic/firedrake/src/petsc/default/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DINTSIZE32 -DSCOTCH_METIS_PREFIX  -c arch_tleaf.c -o arch_tleaf.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=0
/util/academic/firedrake/20210310-basic/firedrake/src/petsc/default/bin/mpicc -fstack-protector -g -O -I/util/academic/firedrake/20210310-basic/firedrake/src/petsc/default/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DINTSIZE32 -DSCOTCH_METIS_PREFIX  -c arch_torus.c -o arch_torus.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=0
/util/academic/firedrake/20210310-basic/firedrake/src/petsc/default/bin/mpicc -fstack-protector -g -O -I/util/academic/firedrake/20210310-basic/firedrake/src/petsc/default/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DINTSIZE32 -DSCOTCH_METIS_PREFIX  -c arch_vcmplt.c -o arch_vcmplt.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=0
/util/academic/firedrake/20210310-basic/firedrake/src/petsc/default/bin/mpicc -fstack-protector -g -O -I/util/academic/firedrake/20210310-basic/firedrake/src/petsc/default/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DINTSIZE32 -DSCOTCH_METIS_PREFIX  -c arch_vhcub.c -o arch_vhcub.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=0
/util/academic/firedrake/20210310-basic/firedrake/src/petsc/default/bin/mpicc -fstack-protector -g -O -I/util/academic/firedrake/20210310-basic/firedrake/src/petsc/default/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DINTSIZE32 -DSCOTCH_METIS_PREFIX  -c bgraph.c -o bgraph.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=0
/util/academic/firedrake/20210310-basic/firedrake/src/petsc/default/bin/mpicc -fstack-protector -g -O -I/util/academic/firedrake/20210310-basic/firedrake/src/petsc/default/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DINTSIZE32 -DSCOTCH_METIS_PREFIX  -c bgraph_bipart_bd.c -o bgraph_bipart_bd.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=0
/util/academic/firedrake/20210310-basic/firedrake/src/petsc/default/bin/mpicc -fstack-protector -g -O -I/util/academic/firedrake/20210310-basic/firedrake/src/petsc/default/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DINTSIZE32 -DSCOTCH_METIS_PREFIX  -c bgraph_bipart_df.c -o bgraph_bipart_df.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=0
/util/academic/firedrake/20210310-basic/firedrake/src/petsc/default/bin/mpicc -fstack-protector -g -O -I/util/academic/firedrake/20210310-basic/firedrake/src/petsc/default/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DINTSIZE32 -DSCOTCH_METIS_PREFIX  -c bgraph_bipart_ex.c -o bgraph_bipart_ex.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=0
/util/academic/firedrake/20210310-basic/firedrake/src/petsc/default/bin/mpicc -fstack-protector -g -O -I/util/academic/firedrake/20210310-basic/firedrake/src/petsc/default/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DINTSIZE32 -DSCOTCH_METIS_PREFIX  -c bgraph_bipart_fm.c -o bgraph_bipart_fm.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=0
/util/academic/firedrake/20210310-basic/firedrake/src/petsc/default/bin/mpicc -fstack-protector -g -O -I/util/academic/firedrake/20210310-basic/firedrake/src/petsc/default/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DINTSIZE32 -DSCOTCH_METIS_PREFIX  -c bgraph_bipart_gg.c -o bgraph_bipart_gg.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=0
/util/academic/firedrake/20210310-basic/firedrake/src/petsc/default/bin/mpicc -fstack-protector -g -O -I/util/academic/firedrake/20210310-basic/firedrake/src/petsc/default/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DINTSIZE32 -DSCOTCH_METIS_PREFIX  -c bgraph_bipart_gp.c -o bgraph_bipart_gp.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=0
/util/academic/firedrake/20210310-basic/firedrake/src/petsc/default/bin/mpicc -fstack-protector -g -O -I/util/academic/firedrake/20210310-basic/firedrake/src/petsc/default/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DINTSIZE32 -DSCOTCH_METIS_PREFIX  -c bgraph_bipart_ml.c -o bgraph_bipart_ml.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=0
/util/academic/firedrake/20210310-basic/firedrake/src/petsc/default/bin/mpicc -fstack-protector -g -O -I/util/academic/firedrake/20210310-basic/firedrake/src/petsc/default/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DINTSIZE32 -DSCOTCH_METIS_PREFIX  -c bgraph_bipart_st.c -o bgraph_bipart_st.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=0
/util/academic/firedrake/20210310-basic/firedrake/src/petsc/default/bin/mpicc -fstack-protector -g -O -I/util/academic/firedrake/20210310-basic/firedrake/src/petsc/default/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DINTSIZE32 -DSCOTCH_METIS_PREFIX  -c bgraph_bipart_zr.c -o bgraph_bipart_zr.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=0
/util/academic/firedrake/20210310-basic/firedrake/src/petsc/default/bin/mpicc -fstack-protector -g -O -I/util/academic/firedrake/20210310-basic/firedrake/src/petsc/default/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DINTSIZE32 -DSCOTCH_METIS_PREFIX  -c bgraph_check.c -o bgraph_check.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=0
/util/academic/firedrake/20210310-basic/firedrake/src/petsc/default/bin/mpicc -fstack-protector -g -O -I/util/academic/firedrake/20210310-basic/firedrake/src/petsc/default/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DINTSIZE32 -DSCOTCH_METIS_PREFIX  -c bgraph_store.c -o bgraph_store.o -DSCOTCH_VERSION_NUM=6 -DSCOTCH_RELEASE_NUM=1 -DSCOTCH_PATCHLEVEL_NUM=0
/util/academic/firedrake/20210310-basic/firedrake/src/petsc/default/bin/mpicc -fstack-protector -g -O -I/util/academic/firedrake/20210310-basic/firedrake/src/petsc/default/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DINTSIZE32 -DSCOTCH_METIS_PREFIX  -c common.c -DSCOTCH_COMMON_RENAME -o common.o
/util/academic/firedrake/20210310-basic/firedrake/src/petsc/default/bin/mpicc -fstack-protector -g -O -I/util/academic/firedrake/20210310-basic/firedrake/src/petsc/default/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DINTSIZE32 -DSCOTCH_METIS_PREFIX  -c common_file.c -DSCOTCH_COMMON_RENAME -o common_file.o
/util/academic/firedrake/20210310-basic/firedrake/src/petsc/default/bin/mpicc -fstack-protector -g -O -I/util/academic/firedrake/20210310-basic/firedrake/src/petsc/default/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DINTSIZE32 -DSCOTCH_METIS_PREFIX  -c common_file_compress.c -DSCOTCH_COMMON_RENAME -o common_file_compress.o
/util/academic/firedrake/20210310-basic/firedrake/src/petsc/default/bin/mpicc -fstack-protector -g -O -I/util/academic/firedrake/20210310-basic/firedrake/src/petsc/default/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DINTSIZE32 -DSCOTCH_METIS_PREFIX  -c common_file_decompress.c -DSCOTCH_COMMON_RENAME -o common_file_decompress.o
/util/academic/firedrake/20210310-basic/firedrake/src/petsc/default/bin/mpicc -fstack-protector -g -O -I/util/academic/firedrake/20210310-basic/firedrake/src/petsc/default/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DINTSIZE32 -DSCOTCH_METIS_PREFIX  -c common_integer.c -DSCOTCH_COMMON_RENAME -o common_integer.o
/util/academic/firedrake/20210310-basic/firedrake/src/petsc/default/bin/mpicc -fstack-protector -g -O -I/util/academic/firedrake/20210310-basic/firedrake/src/petsc/default/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DINTSIZE32 -DSCOTCH_METIS_PREFIX  -c common_memory.c -DSCOTCH_COMMON_RENAME -o common_memory.o
/util/academic/firedrake/20210310-basic/firedrake/src/petsc/default/bin/mpicc -fstack-protector -g -O -I/util/academic/firedrake/20210310-basic/firedrake/src/petsc/default/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="__restrict" -DINTSIZE32 -DSCOTCH_METIS_PREFIX  -c common_string.c -DSCOTCH_COMMON_RENAME -o common_string.o
make[2]: Leaving directory `/util/academic/firedrake/20210310-basic/firedrake/src/petsc/default/externalpackages/git.ptscotch/src/libscotch'
make[1]: Leaving directory `/util/academic/firedrake/20210310-basic/firedrake/src/petsc/default/externalpackages/git.ptscotch/src/libscotch'In file included from /usr/include/sys/wait.h:30:0,
                 from common.h:130,
                 from common_string.c:57:
/usr/include/signal.h:156:1: error: unknown type name ‘siginfo_t’
 extern void psiginfo (const siginfo_t *__pinfo, const char *__s);
 ^
make[2]: *** [common_string.o] Error 1
make[1]: *** [scotch] Error 2
make: *** [libscotch] Error 2
*******************************************************************************


2021-03-10 13:37:20,781 DEBUG  Popping path '/util/academic/firedrake/20210310-basic/firedrake/src/petsc'
2021-03-10 13:37:20,781 DEBUG  New path '/util/academic/firedrake/20210310-basic/firedrake/src'
2021-03-10 13:37:20,791 INFO   

Install log saved in /util/academic/firedrake/20210310-basic/firedrake-install.log