[firedrake] Configure error on ARCHER

[Jacobs, Christian T]

Hi Florian,

Happy New Year.

It turns out that I was actually using a different script to the one here: /work/y07/y07/fdrake/petsc/reconfigure-cray-gnu-shared.py. When I use the /work/y07/y07/fdrake/petsc/reconfigure-cray-gnu-shared.py script, the configuration is successful (https://gist.github.com/ctjacobs/508c195437304afdb65e). However, "make PETSC_DIR=/work/n01/n01/ctjacobs//build_new/petsc PETSC_ARCH=cray-gnu-shared all" then fails with a "No rule to make target" error: https://gist.github.com/ctjacobs/dbcbcb07d6f48b837ad0 . Any ideas? Note that this is using an up-to-date download of https://bitbucket.org/mapdes/petsc/get/firedrake.tar.bz2, and not a clone of https://bitbucket.org/petsc/petsc.git.

Cheers,
Christian
________________________________________
From: firedrake-bounces at imperial.ac.uk [firedrake-bounces at imperial.ac.uk] on behalf of Florian Rathgeber [florian.rathgeber at imperial.ac.uk]
Sent: 01 January 2015 09:31
To: firedrake
Subject: Re: [firedrake] Configure error on ARCHER

On 31/12/14 16:22, Jacobs, Christian T wrote:
> I'm trying to build an up-to-date version of PETSc on ARCHER. I'm using the script in the Firedrake petsc directory for configuring: /work/y07/y07/fdrake/petsc/reconfigure-cray-gnu-shared.py and the following steps:
>
> cd $WORK/build_new/petsc
> source ~/firedrake.env
> python reconfigure-cray-gnu-shared.py
>
> firedrake.env contains:
>
> module unload PrgEnv-cray
> module load PrgEnv-gnu
> module unload python
> module load anaconda
>
> # Add fdrake module path
> export FDRAKE_DIR=/work/y07/y07/fdrake
> module use $FDRAKE_DIR/modules
>
> # Load build environment
> module load fdrake-build-env
> module load fdrake-python-env
>
> export PETSC_ARCH=cray-gnu-shared
> export PETSC_DIR=$WORK/build_new/petsc
>
> The configuration step fails with a segmentation fault when making 'ml'. Has anyone else encountered this issue? Does the configuration script need updating?
> output_configure.log: https://gist.github.com/ctjacobs/8611d07eae5dfb1f39f2

I would need configure.log to be able to say anything. Afaik no one has
tried configuring with ml on ARCHER, so it may work with our reconfigure
script.

Happy New Year!

Florian

-------------- next part --------------
A non-text attachment was scrubbed...
Name: winmail.dat
Type: application/ms-tnef
Size: 4342 bytes
Desc: not available
URL: <http://mailman.ic.ac.uk/pipermail/firedrake/attachments/20150102/9d6b33cb/attachment.bin>