[firedrake] FD on mac

[Justin Chang]

Ah right, didn't think about that. Got it, thanks!

On Sat, Nov 28, 2015 at 3:35 AM, Miklós Homolya <m.homolya14 at imperial.ac.uk>
wrote:

> With respect to the libspatialindex problem:
>
> Yes, see https://github.com/firedrakeproject/firedrake/issues/640
>
> I suggest you to try rebuilding libspatialindex from source (you can do
> that with homebrew) using the same compiler as you used to build firedrake.
>
>
> On 28/11/15 07:11, Justin Chang wrote:
>
> Hi all,
>
> I also had the mpif90 error on my El Capitan Macbook, but worked around it
> by rebuilding the openmpi with the latest brew gcc compilers (GCC 5.2.0).
> It seems the default configuration provided by Homebrew is built with
> Apple's compilers (and thus has no wrapper for the mpif90). I put these in
> my ~/.profile:
>
> export HOMEBREW_CC=gcc-5
> export HOMEBREW_CXX=g++-5
> export FC=gfortran-5
>
> and rebuilt openmpi via:
>
>
> brew reinstall openmpi --build-from-source
>
>
> Firedrake installs successfully, but now I am running into a spatialindex
> related problem whenever I try to import the firedrake module:
>
>
> python -c 'from firedrake import *'
>
> Traceback (most recent call last):
>
>   File "<string>", line 1, in <module>
>
>   File
> "/Users/justin/Software/firedrake/src/firedrake/firedrake/__init__.py",
> line 31, in <module>
>
>     from firedrake.assemble import *
>
>   File
> "/Users/justin/Software/firedrake/src/firedrake/firedrake/assemble.py",
> line 10, in <module>
>
>     from firedrake import assemble_expressions
>
>   File
> "/Users/justin/Software/firedrake/src/firedrake/firedrake/assemble_expressions.py",
> line 17, in <module>
>
>     from firedrake import function
>
>   File
> "/Users/justin/Software/firedrake/src/firedrake/firedrake/function.py",
> line 14, in <module>
>
>     from firedrake import functionspace
>
>   File
> "/Users/justin/Software/firedrake/src/firedrake/firedrake/functionspace.py",
> line 17, in <module>
>
>     import firedrake.mesh as mesh_t
>
>   File "/Users/justin/Software/firedrake/src/firedrake/firedrake/mesh.py",
> line 16, in <module>
>
>     import firedrake.spatialindex as spatialindex
>
> ImportError:
> dlopen(/Users/justin/Software/firedrake/src/firedrake/firedrake/spatialindex.so,
> 2): Symbol not found:
> __ZN5Tools11PropertySet11setPropertyENSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKNS_7VariantE
>
>   Referenced from:
> /Users/justin/Software/firedrake/src/firedrake/firedrake/spatialindex.so
>
>   Expected in: flat namespace
>
>  in
> /Users/justin/Software/firedrake/src/firedrake/firedrake/spatialindex.so
>
> Looks like something went awry with spatialindex. Anyone else having this
> problem?
>
> Thanks,
> Justin
>
> On Fri, Nov 27, 2015 at 11:26 AM, Lawrence Mitchell <
> <lawrence.mitchell at imperial.ac.uk>lawrence.mitchell at imperial.ac.uk> wrote:
>
>>
>> > On 27 Nov 2015, at 15:44, Onno Bokhove < <O.Bokhove at leeds.ac.uk>
>> O.Bokhove at leeds.ac.uk> wrote:
>> >
>> > That is what I got yesterday, but Floriane Gidel went past it on her
>> mac laptop.
>> > Computer IT staff and I could not figure out what it was.
>> > We tried anaconda (worked with Floriane), but not with me.
>> > He thought my mpif90 was probably slightly older: so reloading Xcode an
>> option?
>> > Updating the OS?
>>
>> Hopefully not!
>>
>> > From: firedrake-bounces at imperial.ac.uk <
>> firedrake-bounces at imperial.ac.uk> on behalf of Wingate, Beth <
>> B.Wingate at exeter.ac.uk>
>> > Sent: Friday, November 27, 2015 3:41 PM
>> > To: firedrake at imperial.ac.uk
>> > Subject: Re: [firedrake] FD on mac
>> >
>> > I’m getting the same thing — firedrake now doesn’t install due to
>> “mpif90” not working:
>> >
>> >     TESTING: checkFortranCompiler from
>> config.setCompilers(/private/var/folders/zn/46_9pn0x2k32_z59z6fw5j2w0000gn/T/pip-AO07XK-build/config/BuildSystem/config/setCompilers.py:919)
>> >
>>  *******************************************************************************
>> >              UNABLE to CONFIGURE with GIVEN OPTIONS    (see
>> configure.log for details):
>> >
>>  -------------------------------------------------------------------------------
>> >     Fortran compiler you provided with --with-fc=/usr/local/bin/mpif90
>> does not work.
>> >     Cannot compile FC with /usr/local/bin/mpif90.
>> >
>>  *******************************************************************************
>>
>>
>> If you try to compile the following simple Fortran hello world code with
>> mpif90, what happens?
>>
>> $ cat > hello.f90 << EOF
>> program main
>> use mph
>> implicit none
>> write(*, *)'Hello world'
>> end program
>> EOF
>> $ mpif90 hello.f90 -o hello
>> $ ./hello
>>
>> Cheers,
>>
>> Lawrence
>>
>>
>> _______________________________________________
>> firedrake mailing list
>> firedrake at imperial.ac.uk
>> https://mailman.ic.ac.uk/mailman/listinfo/firedrake
>>
>>
>
>
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