[firedrake] FD on mac

[Miklós Homolya]

Please let me know if that fixes your problem.

On 28/11/15 20:08, Justin Chang wrote:
> Ah right, didn't think about that. Got it, thanks!
>
> On Sat, Nov 28, 2015 at 3:35 AM, Miklós Homolya 
> <m.homolya14 at imperial.ac.uk <mailto:m.homolya14 at imperial.ac.uk>> wrote:
>
>     With respect to the libspatialindex problem:
>
>     Yes, see https://github.com/firedrakeproject/firedrake/issues/640
>
>     I suggest you to try rebuilding libspatialindex from source (you
>     can do that with homebrew) using the same compiler as you used to
>     build firedrake.
>
>
>     On 28/11/15 07:11, Justin Chang wrote:
>>     Hi all,
>>
>>     I also had the mpif90 error on my El Capitan Macbook, but worked
>>     around it by rebuilding the openmpi with the latest brew gcc
>>     compilers (GCC 5.2.0). It seems the default configuration
>>     provided by Homebrew is built with Apple's compilers (and thus
>>     has no wrapper for the mpif90). I put these in my ~/.profile:
>>
>>     export HOMEBREW_CC=gcc-5
>>     export HOMEBREW_CXX=g++-5
>>     export FC=gfortran-5
>>
>>     and rebuilt openmpi via:
>>
>>
>>     brew reinstall openmpi --build-from-source
>>
>>
>>     Firedrake installs successfully, but now I am running into a
>>     spatialindex related problem whenever I try to import the
>>     firedrake module:
>>
>>
>>     python -c 'from firedrake import *'
>>
>>     Traceback (most recent call last):
>>
>>     File "<string>", line 1, in <module>
>>
>>     File
>>     "/Users/justin/Software/firedrake/src/firedrake/firedrake/__init__.py",
>>     line 31, in <module>
>>
>>       from firedrake.assemble import *
>>
>>     File
>>     "/Users/justin/Software/firedrake/src/firedrake/firedrake/assemble.py",
>>     line 10, in <module>
>>
>>       from firedrake import assemble_expressions
>>
>>     File
>>     "/Users/justin/Software/firedrake/src/firedrake/firedrake/assemble_expressions.py",
>>     line 17, in <module>
>>
>>       from firedrake import function
>>
>>     File
>>     "/Users/justin/Software/firedrake/src/firedrake/firedrake/function.py",
>>     line 14, in <module>
>>
>>       from firedrake import functionspace
>>
>>     File
>>     "/Users/justin/Software/firedrake/src/firedrake/firedrake/functionspace.py",
>>     line 17, in <module>
>>
>>       import firedrake.mesh as mesh_t
>>
>>     File
>>     "/Users/justin/Software/firedrake/src/firedrake/firedrake/mesh.py",
>>     line 16, in <module>
>>
>>       import firedrake.spatialindex as spatialindex
>>
>>     ImportError:
>>     dlopen(/Users/justin/Software/firedrake/src/firedrake/firedrake/spatialindex.so,
>>     2): Symbol not found:
>>     __ZN5Tools11PropertySet11setPropertyENSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKNS_7VariantE
>>
>>     Referenced from:
>>     /Users/justin/Software/firedrake/src/firedrake/firedrake/spatialindex.so
>>
>>     Expected in: flat namespace
>>
>>      in
>>     /Users/justin/Software/firedrake/src/firedrake/firedrake/spatialindex.so
>>
>>
>>     Looks like something went awry with spatialindex. Anyone else
>>     having this problem?
>>
>>     Thanks,
>>     Justin
>>
>>     On Fri, Nov 27, 2015 at 11:26 AM, Lawrence Mitchell
>>     <lawrence.mitchell at imperial.ac.uk
>>     <mailto:lawrence.mitchell at imperial.ac.uk>> wrote:
>>
>>
>>         > On 27 Nov 2015, at 15:44, Onno Bokhove
>>         <O.Bokhove at leeds.ac.uk <mailto:O.Bokhove at leeds.ac.uk>> wrote:
>>         >
>>         > That is what I got yesterday, but Floriane Gidel went past
>>         it on her mac laptop.
>>         > Computer IT staff and I could not figure out what it was.
>>         > We tried anaconda (worked with Floriane), but not with me.
>>         > He thought my mpif90 was probably slightly older: so
>>         reloading Xcode an option?
>>         > Updating the OS?
>>
>>         Hopefully not!
>>
>>         > From: firedrake-bounces at imperial.ac.uk
>>         <mailto:firedrake-bounces at imperial.ac.uk>
>>         <firedrake-bounces at imperial.ac.uk
>>         <mailto:firedrake-bounces at imperial.ac.uk>> on behalf of
>>         Wingate, Beth <B.Wingate at exeter.ac.uk
>>         <mailto:B.Wingate at exeter.ac.uk>>
>>         > Sent: Friday, November 27, 2015 3:41 PM
>>         > To: firedrake at imperial.ac.uk <mailto:firedrake at imperial.ac.uk>
>>         > Subject: Re: [firedrake] FD on mac
>>         >
>>         > I’m getting the same thing — firedrake now doesn’t install
>>         due to “mpif90” not working:
>>         >
>>         >     TESTING: checkFortranCompiler from
>>         config.setCompilers(/private/var/folders/zn/46_9pn0x2k32_z59z6fw5j2w0000gn/T/pip-AO07XK-build/config/BuildSystem/config/setCompilers.py:919)
>>         >
>>          *******************************************************************************
>>         >              UNABLE to CONFIGURE with GIVEN OPTIONS    (see
>>         configure.log for details):
>>         >
>>          -------------------------------------------------------------------------------
>>         >     Fortran compiler you provided with
>>         --with-fc=/usr/local/bin/mpif90 does not work.
>>         >     Cannot compile FC with /usr/local/bin/mpif90.
>>         >
>>          *******************************************************************************
>>
>>
>>         If you try to compile the following simple Fortran hello
>>         world code with mpif90, what happens?
>>
>>         $ cat > hello.f90 << EOF
>>         program main
>>         use mph
>>         implicit none
>>         write(*, *)'Hello world'
>>         end program
>>         EOF
>>         $ mpif90 hello.f90 -o hello
>>         $ ./hello
>>
>>         Cheers,
>>
>>         Lawrence
>>
>>
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>>
>>
>>
>>
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>
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